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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031895 through 18771 annotations produced 1 hits



(CG4497):

Annotation Number : CG4497
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031895
Gbrowse : chr2L:7191401-7194412 (-) // 100.0 //
Probeset : 1631279_at
Accessions : protein= NP_609102;, nucleotide= NM_135258;
FlyMine data for FBgn0031895.
BDGP gene expression has embryonic in situ data for CG4497: 15 pix of staining in 5 body parts.
VDRC has 1 RNAi stocks for FBgn0031895 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain29 ± 14 of 4 0.90None
Head9 ± 21 of 4 0.30Down
Eye7 ± 21 of 4 0.24Down
Thoracicoabdominal ganglion15 ± 33 of 4 0.50Down
Salivary gland10 ± 51 of 4 0.34Down
Crop7 ± 11 of 4 0.20Down
Midgut3 ± 10 of 4 0.10Down
Tubule3 ± 00 of 4 0.10Down
Hindgut6 ± 10 of 4 0.20Down
Heart4 ± 20 of 4 0.14Down
Fat body9 ± 30 of 4 0.30Down
Ovary44 ± 34 of 4 1.40Up
Testis82 ± 74 of 4 2.60Up
Male accessory glands8 ± 10 of 4 0.30Down
Virgin spermatheca3 ± 10 of 4 0.12Down
Mated spermatheca3 ± 10 of 4 0.11Down
Adult carcass15 ± 12 of 4 0.50Down
Larval CNS17 ± 24 of 4 0.57Down
Larval Salivary gland14 ± 03 of 4 0.45Down
Larval midgut2 ± 00 of 4 0.07Down
Larval tubule11 ± 10 of 4 0.40Down
Larval hindgut3 ± 00 of 4 0.12Down
Larval fat body15 ± 50 of 4 0.50Down
Larval trachea7 ± 22 of 4 0.25Down
Larval carcass8 ± 10 of 4 0.27Down
S2 cells (growing)13 ± 13 of 4 0.42Down
Whole fly31 ± 14 of 4

Looking for FBgn0031895. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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