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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031897 through 18771 annotations produced 3 hits



(CG13784):

Annotation Number : CG13784
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031897
Gbrowse : chr2L:7218642-7220029 (-) // 100.0 //
Probeset : 1623893_at
Accessions : protein= NP_001036343; /// NP_723261;, nucleotide= NM_001042878; /// NM_164742;
FlyMine data for FBgn0031897.
BDGP gene expression has embryonic in situ data for CG13784: 21 pix of staining in 12 body parts.
BioGrid reports that CG13784 interacts with CG13889 CG8219 .
TRiP has 1 RNAi stocks for FBgn0031897 available for purchase.
VDRC has 2 RNAi stocks for FBgn0031897 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 02 of 4 0.40None
Head6 03 of 4 0.50None
Eye4 01 of 4 0.36None
Thoracicoabdominal ganglion5 12 of 4 0.50None
Salivary gland14 21 of 4 1.27None
Crop6 03 of 4 0.50None
Midgut6 14 of 4 0.60None
Tubule7 01 of 4 0.60Down
Hindgut6 14 of 4 0.60None
Heart7 04 of 4 0.63None
Fat body10 24 of 4 0.91None
Ovary4 13 of 4 0.30None
Testis18 44 of 4 1.60None
Male accessory glands6 01 of 4 0.50None
Virgin spermatheca8 23 of 4 0.71None
Mated spermatheca5 03 of 4 0.49None
Adult carcass8 10 of 4 0.70None
Larval CNS3 13 of 4 0.29None
Larval Salivary gland8 14 of 4 0.72None
Larval midgut6 13 of 4 0.53None
Larval tubule5 03 of 4 0.50None
Larval hindgut5 13 of 4 0.51None
Larval fat body11 22 of 4 1.00None
Larval trachea5 03 of 4 0.48None
Larval carcass4 12 of 4 0.42None
S2 cells (growing)16 14 of 4 1.44None
Whole fly11 33 of 4



(CG13784):

Annotation Number : CG13784
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031897
Gbrowse : chr2L:7205249-7220029 (-) // 100.0 //
Probeset : 1634269_at
Accessions : protein= NP_001036343; /// NP_723261;, nucleotide= NM_001042878; /// NM_164742;
FlyMine data for FBgn0031897.
BDGP gene expression has embryonic in situ data for CG13784: 21 pix of staining in 12 body parts.
BioGrid reports that CG13784 interacts with CG13889 CG8219 .
TRiP has 1 RNAi stocks for FBgn0031897 available for purchase.
VDRC has 2 RNAi stocks for FBgn0031897 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain150 34 of 4 0.80Down
Head320 194 of 4 1.60Up
Eye252 174 of 4 1.30Up
Thoracicoabdominal ganglion98 44 of 4 0.50Down
Salivary gland258 84 of 4 1.33Up
Crop141 74 of 4 0.70Down
Midgut373 194 of 4 1.90Up
Tubule553 194 of 4 2.80Up
Hindgut192 44 of 4 1.00None
Heart451 84 of 4 2.32Up
Fat body868 344 of 4 4.47Up
Ovary210 34 of 4 1.10None
Testis78 24 of 4 0.40Down
Male accessory glands159 124 of 4 0.80None
Virgin spermatheca943 324 of 4 4.86Up
Mated spermatheca838 434 of 4 4.31Up
Adult carcass370 174 of 4 1.90Up
Larval CNS79 54 of 4 0.41Down
Larval Salivary gland851 574 of 4 4.38Up
Larval midgut226 74 of 4 1.16Up
Larval tubule258 74 of 4 1.30Up
Larval hindgut225 154 of 4 1.16None
Larval fat body587 444 of 4 3.00Up
Larval trachea110 124 of 4 0.57Down
Larval carcass327 274 of 4 1.68Up
S2 cells (growing)96 34 of 4 0.49Down
Whole fly194 104 of 4



(CG13784):

Annotation Number : CG13784
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031897
Gbrowse : chr2L:7218642-7220029 (-) // 100.0 //
Probeset : 1639508_a_at
Accessions : protein= NP_001036343; /// NP_723261;, nucleotide= NM_001042878; /// NM_164742;
FlyMine data for FBgn0031897.
BDGP gene expression has embryonic in situ data for CG13784: 21 pix of staining in 12 body parts.
BioGrid reports that CG13784 interacts with CG13889 CG8219 .
TRiP has 1 RNAi stocks for FBgn0031897 available for purchase.
VDRC has 2 RNAi stocks for FBgn0031897 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain9 14 of 4 0.30Down
Head29 73 of 4 1.00None
Eye1 00 of 4 0.06Down
Thoracicoabdominal ganglion6 10 of 4 0.20Down
Salivary gland5 10 of 4 0.18Down
Crop14 31 of 4 0.50Down
Midgut34 30 of 4 1.20None
Tubule6 00 of 4 0.20Down
Hindgut15 12 of 4 0.50Down
Heart13 10 of 4 0.46Down
Fat body33 154 of 4 1.17None
Ovary10 23 of 4 0.40Down
Testis62 14 of 4 2.20Up
Male accessory glands4 20 of 4 0.20Down
Virgin spermatheca10 22 of 4 0.37Down
Mated spermatheca16 42 of 4 0.57None
Adult carcass38 34 of 4 1.40Up
Larval CNS2 10 of 4 0.08Down
Larval Salivary gland10 31 of 4 0.35Down
Larval midgut10 10 of 4 0.37Down
Larval tubule24 33 of 4 0.90None
Larval hindgut4 10 of 4 0.14Down
Larval fat body56 44 of 4 2.00Up
Larval trachea4 10 of 4 0.15Down
Larval carcass6 10 of 4 0.21Down
S2 cells (growing)31 33 of 4 1.11None
Whole fly28 24 of 4

Looking for FBgn0031897. 3 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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