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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031902 through 18771 annotations produced 1 hits



Wnt6 (Wnt6):

Annotation Number : CG4969
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031902
Gbrowse : chr2L:7350897-7352280 (+) // 100.0 //
Probeset : 1627979_at
Accessions : protein= NP_609108;, nucleotide= NM_135264;
Pathway : calcium modulating pathway // inferred from electronic annotation /// 0007275 // multicellular organismal development /
Interpro : 0005576 // extracellular region // inferred from sequence or structural similarity /// 0005576 // extracellular region /
FlyMine data for FBgn0031902.
Homophila reports that CG4969 is a close match (1e-35) to human gene WNT10A (NP_079492), a gene associated with Odontoonychodermal dysplasia, 257980 (3).
BioGrid reports that CG4969 interacts with CG1916 CG4889 .
TRiP has 2 RNAi stocks for FBgn0031902 available for purchase.
VDRC has 3 RNAi stocks for FBgn0031902 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 00 of 4 0.10None
Head27 44 of 4 4.10Up
Eye52 34 of 4 7.85Up
Thoracicoabdominal ganglion0 00 of 4 0.10None
Salivary gland5 20 of 4 0.76None
Crop10 31 of 4 1.60None
Midgut11 20 of 4 1.60None
Tubule19 32 of 4 2.90Up
Hindgut14 20 of 4 2.20Up
Heart1 00 of 4 0.20None
Fat body0 00 of 4 0.10None
Ovary0 00 of 4 0.10None
Testis10 10 of 4 1.50None
Male accessory glands2 10 of 4 0.40None
Virgin spermatheca0 00 of 4 0.10None
Mated spermatheca0 00 of 4 0.08None
Adult carcass29 34 of 4 4.40Up
Larval CNS2 20 of 4 0.31None
Larval Salivary gland0 00 of 4 0.10None
Larval midgut2 00 of 4 0.30None
Larval tubule58 84 of 4 8.70Up
Larval hindgut3 00 of 4 0.52None
Larval fat body1 00 of 4 0.20None
Larval trachea54 84 of 4 8.06Up
Larval carcass7 30 of 4 1.12None
S2 cells (growing)0 00 of 4 0.13None
Whole fly6 20 of 4

Looking for FBgn0031902. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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