FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0031903 through 18771 annotations produced 2 hits

Wnt10 (Wnt10):

Annotation Number : S.C2L000994
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031903
Gbrowse : chr2L:7365973-7370391 (+) // 100.0 //
Probeset : 1623319_at
Accessions : protein= NP_609109;, nucleotide= NM_135265;
Pathway : calcium modulating pathway // inferred from electronic annotation /// 0007275 // multicellular organismal development /
Interpro : 0005576 // extracellular region // inferred from sequence or structural similarity /// 0005576 // extracellular region /
FlyMine data for FBgn0031903.
TRiP has 1 RNAi stocks for FBgn0031903 available for purchase.
VDRC has 1 RNAi stocks for FBgn0031903 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	3 ± 1	0 of 4	1.30	None
Head	1 ± 0	0 of 4	0.80	None
Eye	1 ± 0	0 of 4	0.52	None
Thoracicoabdominal ganglion	0 ± 0	0 of 4	0.30	None
Salivary gland	1 ± 0	0 of 4	0.71	None
Crop	1 ± 0	0 of 4	0.60	None
Midgut	1 ± 0	0 of 4	0.50	None
Tubule	2 ± 0	0 of 4	0.90	None
Hindgut	2 ± 0	0 of 4	1.00	None
Heart	1 ± 0	0 of 4	0.57	None
Fat body	1 ± 0	0 of 4	0.64	None
Ovary	1 ± 0	0 of 4	0.70	None
Testis	2 ± 0	0 of 4	0.90	None
Male accessory glands	4 ± 1	0 of 4	2.00	None
Virgin spermatheca	0 ± 0	0 of 4	0.37	None
Mated spermatheca	1 ± 0	0 of 4	0.67	None
Adult carcass	6 ± 2	0 of 4	2.60	None
Larval CNS	5 ± 3	0 of 4	2.10	None
Larval Salivary gland	1 ± 0	0 of 4	0.59	None
Larval midgut	3 ± 0	0 of 4	1.24	None
Larval tubule	0 ± 0	0 of 4	0.30	None
Larval hindgut	0 ± 0	0 of 4	0.37	None
Larval fat body	1 ± 0	0 of 4	0.40	None
Larval trachea	1 ± 0	0 of 4	0.66	None
Larval carcass	2 ± 0	0 of 4	0.93	None
S2 cells (growing)	1 ± 0	0 of 4	0.79	None
Whole fly	2 ± 0	0 of 4

Wnt10 (Wnt10):

Annotation Number : CG4971
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031903
Gbrowse : chr2L:7374761-7377259 (+) // 100.0 //
Probeset : 1631448_at
Accessions : protein= NP_609109;, nucleotide= NM_135265;
Pathway : calcium modulating pathway // inferred from electronic annotation /// 0007275 // multicellular organismal development /
Interpro : 0005576 // extracellular region // inferred from sequence or structural similarity /// 0005576 // extracellular region /
FlyMine data for FBgn0031903.
Homophila reports that CG4971 is a close match (2e-19) to human gene INT4;WNT3 (NP_110380), a gene associated with Tetra-amelia, autosomal recessive, 273395 (3).
TRiP has 1 RNAi stocks for FBgn0031903 available for purchase.
VDRC has 1 RNAi stocks for FBgn0031903 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	6 ± 1	0 of 4	2.70	Up
Head	5 ± 1	0 of 4	2.10	None
Eye	8 ± 1	3 of 4	3.39	Up
Thoracicoabdominal ganglion	2 ± 0	0 of 4	0.90	None
Salivary gland	9 ± 4	0 of 4	3.75	None
Crop	3 ± 1	1 of 4	1.50	None
Midgut	2 ± 0	0 of 4	0.80	None
Tubule	2 ± 0	0 of 4	1.00	None
Hindgut	3 ± 0	0 of 4	1.50	None
Heart	3 ± 0	0 of 4	1.49	None
Fat body	4 ± 3	0 of 4	1.79	None
Ovary	1 ± 0	0 of 4	0.70	None
Testis	1 ± 0	0 of 4	0.50	None
Male accessory glands	2 ± 1	0 of 4	0.90	None
Virgin spermatheca	1 ± 0	0 of 4	0.46	None
Mated spermatheca	3 ± 2	0 of 4	1.28	None
Adult carcass	3 ± 1	0 of 4	1.20	None
Larval CNS	11 ± 2	1 of 4	4.33	Up
Larval Salivary gland	7 ± 2	0 of 4	3.05	None
Larval midgut	5 ± 2	0 of 4	2.17	None
Larval tubule	0 ± 0	0 of 4	0.40	None
Larval hindgut	3 ± 1	0 of 4	1.43	None
Larval fat body	4 ± 1	0 of 4	1.70	None
Larval trachea	3 ± 5	0 of 4	1.38	None
Larval carcass	3 ± 1	0 of 4	1.30	None
S2 cells (growing)	0 ± 0	0 of 4	0.26	None
Whole fly	2 ± 0	0 of 4

Looking for FBgn0031903. 2 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720