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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031903 through 18771 annotations produced 2 hits



Wnt10 (Wnt10):

Annotation Number : S.C2L000994
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031903
Gbrowse : chr2L:7365973-7370391 (+) // 100.0 //
Probeset : 1623319_at
Accessions : protein= NP_609109;, nucleotide= NM_135265;
Pathway : calcium modulating pathway // inferred from electronic annotation /// 0007275 // multicellular organismal development /
Interpro : 0005576 // extracellular region // inferred from sequence or structural similarity /// 0005576 // extracellular region /
FlyMine data for FBgn0031903.
TRiP has 1 RNAi stocks for FBgn0031903 available for purchase.
VDRC has 1 RNAi stocks for FBgn0031903 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 10 of 4 1.30None
Head1 00 of 4 0.80None
Eye1 00 of 4 0.52None
Thoracicoabdominal ganglion0 00 of 4 0.30None
Salivary gland1 00 of 4 0.71None
Crop1 00 of 4 0.60None
Midgut1 00 of 4 0.50None
Tubule2 00 of 4 0.90None
Hindgut2 00 of 4 1.00None
Heart1 00 of 4 0.57None
Fat body1 00 of 4 0.64None
Ovary1 00 of 4 0.70None
Testis2 00 of 4 0.90None
Male accessory glands4 10 of 4 2.00None
Virgin spermatheca0 00 of 4 0.37None
Mated spermatheca1 00 of 4 0.67None
Adult carcass6 20 of 4 2.60None
Larval CNS5 30 of 4 2.10None
Larval Salivary gland1 00 of 4 0.59None
Larval midgut3 00 of 4 1.24None
Larval tubule0 00 of 4 0.30None
Larval hindgut0 00 of 4 0.37None
Larval fat body1 00 of 4 0.40None
Larval trachea1 00 of 4 0.66None
Larval carcass2 00 of 4 0.93None
S2 cells (growing)1 00 of 4 0.79None
Whole fly2 00 of 4



Wnt10 (Wnt10):

Annotation Number : CG4971
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031903
Gbrowse : chr2L:7374761-7377259 (+) // 100.0 //
Probeset : 1631448_at
Accessions : protein= NP_609109;, nucleotide= NM_135265;
Pathway : calcium modulating pathway // inferred from electronic annotation /// 0007275 // multicellular organismal development /
Interpro : 0005576 // extracellular region // inferred from sequence or structural similarity /// 0005576 // extracellular region /
FlyMine data for FBgn0031903.
Homophila reports that CG4971 is a close match (2e-19) to human gene INT4;WNT3 (NP_110380), a gene associated with Tetra-amelia, autosomal recessive, 273395 (3).
TRiP has 1 RNAi stocks for FBgn0031903 available for purchase.
VDRC has 1 RNAi stocks for FBgn0031903 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 10 of 4 2.70Up
Head5 10 of 4 2.10None
Eye8 13 of 4 3.39Up
Thoracicoabdominal ganglion2 00 of 4 0.90None
Salivary gland9 40 of 4 3.75None
Crop3 11 of 4 1.50None
Midgut2 00 of 4 0.80None
Tubule2 00 of 4 1.00None
Hindgut3 00 of 4 1.50None
Heart3 00 of 4 1.49None
Fat body4 30 of 4 1.79None
Ovary1 00 of 4 0.70None
Testis1 00 of 4 0.50None
Male accessory glands2 10 of 4 0.90None
Virgin spermatheca1 00 of 4 0.46None
Mated spermatheca3 20 of 4 1.28None
Adult carcass3 10 of 4 1.20None
Larval CNS11 21 of 4 4.33Up
Larval Salivary gland7 20 of 4 3.05None
Larval midgut5 20 of 4 2.17None
Larval tubule0 00 of 4 0.40None
Larval hindgut3 10 of 4 1.43None
Larval fat body4 10 of 4 1.70None
Larval trachea3 50 of 4 1.38None
Larval carcass3 10 of 4 1.30None
S2 cells (growing)0 00 of 4 0.26None
Whole fly2 00 of 4

Looking for FBgn0031903. 2 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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