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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031904 through 18771 annotations produced 1 hits



/// (CG5149 /// DsecGM13572):

Annotation Number : CG5149
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031904
Gbrowse : chr2L:7384485-7388248 (-) // 100.0 //
Probeset : 1630276_at
Accessions : protein= NP_001137805; /// NP_609110;, nucleotide= NM_001144333; /// NM_135266;
Pathway : 0005923 // tight junction // inferred from electronic annotation
Interpro : 0005198 // structural molecule activity // inferred from electronic annotation /// 0005515 // protein binding // inferre
FlyMine data for FBgn0031904.
BDGP gene expression has embryonic in situ data for CG5149: 34 pix of staining in 8 body parts.
BioGrid reports that CG5149 interacts with CG8449 CG8635 .
TRiP has 2 RNAi stocks for FBgn0031904 available for purchase.
VDRC has 3 RNAi stocks for FBgn0031904 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain417 84 of 4 1.90Up
Head179 34 of 4 0.80Down
Eye186 94 of 4 0.87None
Thoracicoabdominal ganglion526 84 of 4 2.50Up
Salivary gland262 84 of 4 1.23Up
Crop306 54 of 4 1.40Up
Midgut248 114 of 4 1.20None
Tubule408 174 of 4 1.90Up
Hindgut440 114 of 4 2.10Up
Heart126 114 of 4 0.59Down
Fat body129 94 of 4 0.60Down
Ovary364 34 of 4 1.70Up
Testis51 54 of 4 0.20Down
Male accessory glands120 74 of 4 0.60Down
Virgin spermatheca173 34 of 4 0.81Down
Mated spermatheca219 104 of 4 1.03None
Adult carcass79 64 of 4 0.40Down
Larval CNS185 104 of 4 0.87Down
Larval Salivary gland151 44 of 4 0.71Down
Larval midgut518 254 of 4 2.42Up
Larval tubule264 54 of 4 1.20Up
Larval hindgut310 134 of 4 1.45Up
Larval fat body107 114 of 4 0.50Down
Larval trachea241 274 of 4 1.13None
Larval carcass183 64 of 4 0.86Down
S2 cells (growing)319 64 of 4 1.49Up
Whole fly214 44 of 4

Looking for FBgn0031904. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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