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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0031910 through 18771 annotations produced 1 hits

/// (CG15818 /// DsimCG15818):

Annotation Number : CG15818
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031910
Gbrowse : chr2L:7410933-7412184 (+) // 100.0 //
Probeset : 1637095_at
Accessions : protein= NP_609116;, nucleotide= NM_135272;
Interpro : 0005488 // binding // inferred from electronic annotation
FlyMine data for FBgn0031910.
BDGP gene expression has embryonic in situ data for CG15818: 13 pix of staining in 2 body parts.
VDRC has 2 RNAi stocks for FBgn0031910 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 00 of 4 0.10Down
Head5 10 of 4 0.10Down
Eye4 21 of 4 0.11Down
Thoracicoabdominal ganglion5 00 of 4 0.10Down
Salivary gland10 41 of 4 0.26Down
Crop6 00 of 4 0.10Down
Midgut639 174 of 415.80Up
Tubule135 274 of 4 3.30Up
Hindgut176 94 of 4 4.40Up
Heart1 00 of 4 0.04Down
Fat body20 291 of 4 0.51None
Ovary0 00 of 4 0.00Down
Testis4 10 of 4 0.10Down
Male accessory glands5 20 of 4 0.10Down
Virgin spermatheca2 00 of 4 0.07Down
Mated spermatheca7 10 of 4 0.18Down
Adult carcass3 20 of 4 0.10Down
Larval CNS3 20 of 4 0.08Down
Larval Salivary gland1 00 of 4 0.04Down
Larval midgut2655 1494 of 465.73Up
Larval tubule581 634 of 414.40Up
Larval hindgut1278 1124 of 431.65Up
Larval fat body7 40 of 4 0.20Down
Larval trachea3 41 of 4 0.08Down
Larval carcass5 11 of 4 0.13Down
S2 cells (growing)42 14 of 4 1.04None
Whole fly40 74 of 4

Looking for FBgn0031910. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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