Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031914 through 18771 annotations produced 1 hits



(CG5973):

Annotation Number : CG5973
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031914
Gbrowse : chr2L:7437505-7445269 (+) // 100.0 //
Probeset : 1626846_s_at
Accessions : protein= NP_001162901; /// NP_609120; /// NP_723275; /// NP_723276;, nucleotide= NM_001169430; /// NM_135276; /// NM_164750; /// NM_164751;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005885 // Arp2/3 protein complex // inferred from s
Interpro : 0005215 // transporter activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from p
FlyMine data for FBgn0031914.
BDGP gene expression has embryonic in situ data for CG5973: 14 pix of staining in 3 body parts.
Homophila reports that CG5973 is a close match (6e-19) to human gene RLBP1 (NP_000317), a gene associated with Bothnia retinal dystrophy, 607475 (3);Fundus albipunctatus, 136880 (3);Newfoundland rod-cone dystrophy, 607476 (3);Retinitis pigmentosa, AR, 268000 (3);Retinitis punctata albescens, 136880 (3).
VDRC has 1 RNAi stocks for FBgn0031914 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain103 14 of 4 0.30Down
Head968 364 of 4 3.30Up
Eye531 364 of 4 1.78Up
Thoracicoabdominal ganglion155 84 of 4 0.50Down
Salivary gland14 50 of 4 0.05Down
Crop1133 384 of 4 3.80Up
Midgut253 194 of 4 0.90None
Tubule10 20 of 4 0.00Down
Hindgut839 614 of 4 2.80Up
Heart558 424 of 4 1.88Up
Fat body466 364 of 4 1.57Up
Ovary118 144 of 4 0.40Down
Testis16 14 of 4 0.10Down
Male accessory glands140 34 of 4 0.50Down
Virgin spermatheca15 04 of 4 0.05Down
Mated spermatheca14 24 of 4 0.05Down
Adult carcass1364 324 of 4 4.60Up
Larval CNS30 24 of 4 0.10Down
Larval Salivary gland5 10 of 4 0.02Down
Larval midgut438 454 of 4 1.47Up
Larval tubule3 00 of 4 0.00Down
Larval hindgut192 104 of 4 0.65Down
Larval fat body14 23 of 4 0.00Down
Larval trachea425 254 of 4 1.43Up
Larval carcass390 114 of 4 1.31Up
S2 cells (growing)277 54 of 4 0.93None
Whole fly297 174 of 4

Looking for FBgn0031914. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime