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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031925 through 18771 annotations produced 1 hits



Cyp4d21 (Cyp4d21):

Annotation Number : CG6730
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031925
Gbrowse : chr2L:7605599-7607703 (+) // 100.0 //
Probeset : 1639170_at
Accessions : protein= NP_609129;, nucleotide= NM_135285;
Pathway : 0005737 // cytoplasm // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from electronic anno
Interpro : 0004497 // monooxygenase activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred fro
FlyMine data for FBgn0031925.
Homophila reports that CG6730 is a close match (5e-11) to human gene CYP2C9 (NP_000762), a gene associated with Tolbutamide poor metabolizer (3);Warfarin sensitivity, 122700 (3).
VDRC has 2 RNAi stocks for FBgn0031925 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 11 of 4 0.00Down
Head886 1064 of 4 8.20Up
Eye197 224 of 4 1.81Up
Thoracicoabdominal ganglion7 20 of 4 0.10Down
Salivary gland13 80 of 4 0.13Down
Crop5 10 of 4 0.00Down
Midgut0 00 of 4 0.00Down
Tubule2 00 of 4 0.00Down
Hindgut5 10 of 4 0.00Down
Heart5 12 of 4 0.05Down
Fat body8 21 of 4 0.07Down
Ovary1 10 of 4 0.00Down
Testis3 10 of 4 0.00Down
Male accessory glands7 10 of 4 0.10Down
Virgin spermatheca2 10 of 4 0.03Down
Mated spermatheca5 00 of 4 0.05Down
Adult carcass541 304 of 4 5.00Up
Larval CNS3 30 of 4 0.03Down
Larval Salivary gland4 10 of 4 0.04Down
Larval midgut1 00 of 4 0.01Down
Larval tubule3 10 of 4 0.00Down
Larval hindgut4 00 of 4 0.04Down
Larval fat body11 10 of 4 0.10Down
Larval trachea10 84 of 4 0.10Down
Larval carcass3 10 of 4 0.03Down
S2 cells (growing)1 00 of 4 0.02Down
Whole fly108 164 of 4

Looking for FBgn0031925. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime