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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0031926 through 18771 annotations produced 1 hits


Annotation Number : CG6739
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031926
Gbrowse : chr2L:7608389-7616528 (+) // 100.0 //
Probeset : 1641423_at
Accessions : protein= NP_609130;, nucleotide= NM_135286;
FlyMine data for FBgn0031926.
BDGP gene expression has embryonic in situ data for CG6739: 36 pix of staining in 9 body parts.
Homophila reports that CG6739 is a close match (4e-11) to human gene MTSP1;ST14 (NP_068813), a gene associated with Ichthyosis with hypotrichosis, 610765 (3).
VDRC has 1 RNAi stocks for FBgn0031926 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 00 of 4 0.30Down
Head34 14 of 4 2.90Up
Eye30 34 of 4 2.64Up
Thoracicoabdominal ganglion5 10 of 4 0.40Down
Salivary gland10 41 of 4 0.93None
Crop28 24 of 4 2.40Up
Midgut4 01 of 4 0.40Down
Tubule6 00 of 4 0.50Down
Hindgut5 12 of 4 0.40Down
Heart8 03 of 4 0.70Down
Fat body8 12 of 4 0.72Down
Ovary8 04 of 4 0.70Down
Testis9 13 of 4 0.80None
Male accessory glands12 13 of 4 1.10None
Virgin spermatheca6 01 of 4 0.53Down
Mated spermatheca6 00 of 4 0.56Down
Adult carcass28 44 of 4 2.40Up
Larval CNS40 74 of 4 3.45Up
Larval Salivary gland6 22 of 4 0.59None
Larval midgut6 10 of 4 0.52Down
Larval tubule6 11 of 4 0.60Down
Larval hindgut75 24 of 4 6.46Up
Larval fat body21 43 of 4 1.90None
Larval trachea324 424 of 427.79Up
Larval carcass104 114 of 4 8.95Up
S2 cells (growing)3 11 of 4 0.27Down
Whole fly11 04 of 4

Looking for FBgn0031926. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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