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FlyAtlas: the Drosophila gene expression atlas

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This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031935 through 18771 annotations produced 1 hits



(CG13793):

Annotation Number : CG13793
Flybase ID : FBgn0031935
Gbrowse : chr2L:7717051-7719056 (-) // 100.0 //
Probeset : 1633780_at
Accessions : protein= NP_609136;, nucleotide= NM_135292;
Pathway : 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from e
Interpro : 0005326 // neurotransmitter transporter activity // inferred from sequence or structural similarity /// 0005328 // neuro
FlyMine data for FBgn0031935.
Homophila reports that CG13793 is a close match (1e-15) to human gene HTT;OCD1;SLC6A4 (NP_001036), a gene associated with Anxiety-related personality traits, 607834 (3);{Obsessive-compulsive disorder 1}, 164230 (3).
VDRC has 4 RNAi stocks for FBgn0031935 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.10Down
Head35 14 of 4 1.70Up
Eye8 10 of 4 0.41Down
Thoracicoabdominal ganglion3 10 of 4 0.20Down
Salivary gland17 31 of 4 0.84None
Crop5 12 of 4 0.20Down
Midgut8 12 of 4 0.40Down
Tubule11 13 of 4 0.50Down
Hindgut111 74 of 4 5.30Up
Heart542 534 of 425.89Up
Fat body51 144 of 4 2.45Up
Ovary3 00 of 4 0.20Down
Testis4 02 of 4 0.20Down
Male accessory glands10 22 of 4 0.50Down
Virgin spermatheca22 14 of 4 1.07None
Mated spermatheca19 24 of 4 0.92None
Adult carcass146 64 of 4 7.00Up
Larval CNS1 00 of 4 0.05Down
Larval Salivary gland4 20 of 4 0.21Down
Larval midgut3 00 of 4 0.18Down
Larval tubule4 00 of 4 0.20Down
Larval hindgut2 00 of 4 0.12Down
Larval fat body2 00 of 4 0.10Down
Larval trachea7 03 of 4 0.36Down
Larval carcass2 11 of 4 0.12Down
S2 cells (growing)3 11 of 4 0.15Down
Whole fly21 24 of 4

Looking for FBgn0031935. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime