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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031937 through 18771 annotations produced 1 hits



/// (CG13795 /// DsecCG13795):

Annotation Number : CG13795
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031937
Gbrowse : chr2L:7723309-7726298 (-) // 100.0 //
Probeset : 1624836_at
Accessions : protein= NP_609138;, nucleotide= NM_135294;
Pathway : 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from e
Interpro : 0005326 // neurotransmitter transporter activity // inferred from sequence or structural similarity /// 0005328 // neuro
FlyMine data for FBgn0031937.
BDGP gene expression has embryonic in situ data for CG13795: 9 pix of staining in 2 body parts.
Homophila reports that CG13795 is a close match (8e-17) to human gene SLC6A8;CRTR (NP_005620), a gene associated with Creatine deficiency syndrome, X-linked, 300352 (3).
VDRC has 4 RNAi stocks for FBgn0031937 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain18 ± 14 of 4 0.20Down
Head293 ± 164 of 4 3.70Up
Eye212 ± 164 of 4 2.71Up
Thoracicoabdominal ganglion28 ± 24 of 4 0.40Down
Salivary gland22 ± 42 of 4 0.29Down
Crop14 ± 13 of 4 0.20Down
Midgut9 ± 12 of 4 0.10Down
Tubule20 ± 33 of 4 0.30Down
Hindgut41 ± 34 of 4 0.50Down
Heart903 ± 454 of 411.50Up
Fat body856 ± 554 of 410.91Up
Ovary2 ± 00 of 4 0.00Down
Testis1 ± 00 of 4 0.00Down
Male accessory glands5 ± 20 of 4 0.10Down
Virgin spermatheca1016 ± 414 of 412.95Up
Mated spermatheca814 ± 844 of 410.37Up
Adult carcass409 ± 164 of 4 5.20Up
Larval CNS8 ± 24 of 4 0.11Down
Larval Salivary gland29 ± 24 of 4 0.37Down
Larval midgut16 ± 33 of 4 0.21Down
Larval tubule20 ± 14 of 4 0.30Down
Larval hindgut27 ± 74 of 4 0.35Down
Larval fat body1177 ± 1314 of 415.00Up
Larval trachea17 ± 63 of 4 0.22Down
Larval carcass27 ± 34 of 4 0.35Down
S2 cells (growing)400 ± 144 of 4 5.10Up
Whole fly78 ± 44 of 4

Looking for FBgn0031937. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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