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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031939 through 18771 annotations produced 2 hits



(CG13796):

Annotation Number : CG13796
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031939
Gbrowse : chr2L:7727496-7732656 (-) // 100.0 //
Probeset : 1640224_s_at
Accessions : protein= NP_001137807; /// NP_609140; /// NP_723308; /// NP_723309;, nucleotide= NM_001144335; /// NM_135296; /// NM_164766; /// NM_164767;
Pathway : 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from e
Interpro : 0005326 // neurotransmitter transporter activity // inferred from sequence or structural similarity /// 0005328 // neuro
FlyMine data for FBgn0031939.
Homophila reports that CG13796 is a close match (1e-13) to human gene NAT1;NET1;SLC6A2 (NP_001034), a gene associated with Orthostatic intolerance, 604715 (3).
VDRC has 3 RNAi stocks for FBgn0031939 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain14 ± 14 of 4 0.70None
Head22 ± 24 of 4 1.10None
Eye14 ± 04 of 4 0.72None
Thoracicoabdominal ganglion16 ± 14 of 4 0.80None
Salivary gland14 ± 11 of 4 0.74None
Crop71 ± 64 of 4 3.50Up
Midgut107 ± 24 of 4 5.30Up
Tubule16 ± 13 of 4 0.80None
Hindgut57 ± 24 of 4 2.90Up
Heart80 ± 44 of 4 3.99Up
Fat body167 ± 174 of 4 8.32Up
Ovary7 ± 03 of 4 0.40Down
Testis6 ± 02 of 4 0.30Down
Male accessory glands21 ± 34 of 4 1.10None
Virgin spermatheca83 ± 44 of 4 4.16Up
Mated spermatheca70 ± 44 of 4 3.52Up
Adult carcass93 ± 34 of 4 4.60Up
Larval CNS11 ± 24 of 4 0.59Down
Larval Salivary gland9 ± 22 of 4 0.48Down
Larval midgut187 ± 444 of 4 9.31Up
Larval tubule43 ± 34 of 4 2.20Up
Larval hindgut44 ± 84 of 4 2.22None
Larval fat body1330 ± 1934 of 466.10Up
Larval trachea177 ± 184 of 4 8.81Up
Larval carcass100 ± 294 of 4 4.99None
S2 cells (growing)3 ± 00 of 4 0.17Down
Whole fly20 ± 24 of 4



Adult cuticle protein 1 /// /// (Acp1 /// CG13796 /// CG31904):

Annotation Number : CG7216
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0014454 /// FBgn0260479
Gbrowse : chr2L:7740551-7741542 (-) // 100.0 // /// chr2L:7734411-7735206 (-) // 91.07 //
Probeset : 1641474_s_at
Accessions : protein= NP_477115; /// NP_723310; /// NP_723311;, nucleotide= NM_057767; /// NM_164768; /// NM_164769;
Pathway : engulfment // inferred from mutant phenotype"
Interpro : 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from e
FlyMine data for FBgn0014454 /// FBgn0260479.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 10 of 4 0.00None
Head111 ± 144 of 4 2.40Up
Eye246 ± 444 of 4 5.34Up
Thoracicoabdominal ganglion7 ± 12 of 4 0.20None
Salivary gland19 ± 41 of 4 0.42None
Crop6 ± 20 of 4 0.10None
Midgut2 ± 10 of 4 0.10None
Tubule6 ± 10 of 4 0.10Down
Hindgut7 ± 10 of 4 0.20None
Heart405 ± 3554 of 4 8.76None
Fat body22 ± 73 of 4 0.49None
Ovary1 ± 00 of 4 0.00None
Testis3 ± 00 of 4 0.10None
Male accessory glands4 ± 10 of 4 0.10None
Virgin spermatheca5 ± 10 of 4 0.12None
Mated spermatheca7 ± 20 of 4 0.17None
Adult carcass251 ± 684 of 4 5.40None
Larval CNS4 ± 10 of 4 0.09None
Larval Salivary gland5 ± 10 of 4 0.12None
Larval midgut7 ± 30 of 4 0.16None
Larval tubule7 ± 20 of 4 0.20None
Larval hindgut5 ± 10 of 4 0.12None
Larval fat body5 ± 10 of 4 0.10None
Larval trachea3584 ± 5464 of 477.55Up
Larval carcass32 ± 84 of 4 0.70None
S2 cells (growing)2 ± 10 of 4 0.06None
Whole fly46 ± 144 of 4

Looking for FBgn0031939. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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