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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031940 through 18771 annotations produced 1 hits



(CG7214):

Annotation Number : CG7214
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031940
Gbrowse : chr2L:7743676-7744841 (-) // 100.0 //
Probeset : 1635072_at
Accessions : protein= NP_609141;, nucleotide= NM_135297;
FlyMine data for FBgn0031940.
BDGP gene expression has embryonic in situ data for CG7214: 4 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0031940 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 11 of 4 0.10None
Head18 04 of 4 0.30None
Eye63 214 of 4 1.10None
Thoracicoabdominal ganglion0 00 of 4 0.00None
Salivary gland6 20 of 4 0.11None
Crop5 11 of 4 0.10None
Midgut7 20 of 4 0.10None
Tubule5 10 of 4 0.10Down
Hindgut6 01 of 4 0.10None
Heart425 3894 of 4 7.41None
Fat body35 124 of 4 0.62None
Ovary2 00 of 4 0.00None
Testis8 04 of 4 0.10None
Male accessory glands8 30 of 4 0.10None
Virgin spermatheca21 54 of 4 0.37None
Mated spermatheca21 54 of 4 0.38None
Adult carcass409 1604 of 4 7.10None
Larval CNS3 11 of 4 0.07None
Larval Salivary gland2 00 of 4 0.05None
Larval midgut1 00 of 4 0.03None
Larval tubule2 10 of 4 0.00None
Larval hindgut4 01 of 4 0.07None
Larval fat body4 20 of 4 0.10None
Larval trachea5038 4974 of 487.78Up
Larval carcass24 94 of 4 0.43None
S2 cells (growing)1 00 of 4 0.03None
Whole fly57 274 of 4

Looking for FBgn0031940. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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