FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0031940 through 18771 annotations produced 1 hits

(CG7214):

Annotation Number : CG7214
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031940
Gbrowse : chr2L:7743676-7744841 (-) // 100.0 //
Probeset : 1635072_at
Accessions : protein= NP_609141;, nucleotide= NM_135297;
FlyMine data for FBgn0031940.
BDGP gene expression has embryonic in situ data for CG7214: 4 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0031940 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	3 ± 1	1 of 4	0.10	None
Head	18 ± 0	4 of 4	0.30	None
Eye	63 ± 21	4 of 4	1.10	None
Thoracicoabdominal ganglion	0 ± 0	0 of 4	0.00	None
Salivary gland	6 ± 2	0 of 4	0.11	None
Crop	5 ± 1	1 of 4	0.10	None
Midgut	7 ± 2	0 of 4	0.10	None
Tubule	5 ± 1	0 of 4	0.10	Down
Hindgut	6 ± 0	1 of 4	0.10	None
Heart	425 ± 389	4 of 4	7.41	None
Fat body	35 ± 12	4 of 4	0.62	None
Ovary	2 ± 0	0 of 4	0.00	None
Testis	8 ± 0	4 of 4	0.10	None
Male accessory glands	8 ± 3	0 of 4	0.10	None
Virgin spermatheca	21 ± 5	4 of 4	0.37	None
Mated spermatheca	21 ± 5	4 of 4	0.38	None
Adult carcass	409 ± 160	4 of 4	7.10	None
Larval CNS	3 ± 1	1 of 4	0.07	None
Larval Salivary gland	2 ± 0	0 of 4	0.05	None
Larval midgut	1 ± 0	0 of 4	0.03	None
Larval tubule	2 ± 1	0 of 4	0.00	None
Larval hindgut	4 ± 0	1 of 4	0.07	None
Larval fat body	4 ± 2	0 of 4	0.10	None
Larval trachea	5038 ± 497	4 of 4	87.78	Up
Larval carcass	24 ± 9	4 of 4	0.43	None
S2 cells (growing)	1 ± 0	0 of 4	0.03	None
Whole fly	57 ± 27	4 of 4

Looking for FBgn0031940. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720