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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031945 through 18771 annotations produced 1 hits



(CG7191):

Annotation Number : CG7191
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031945
Gbrowse : chr2L:7767648-7775033 (+) // 100.0 //
Probeset : 1627069_at
Accessions : protein= NP_609146;, nucleotide= NM_135302;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0031945.
VDRC has 1 RNAi stocks for FBgn0031945 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain154 ± 34 of 4 9.20Up
Head36 ± 24 of 4 2.10Up
Eye9 ± 12 of 4 0.56Down
Thoracicoabdominal ganglion450 ± 104 of 426.70Up
Salivary gland7 ± 40 of 4 0.44None
Crop3 ± 20 of 4 0.20Down
Midgut134 ± 64 of 4 8.00Up
Tubule20 ± 62 of 4 1.20None
Hindgut18 ± 12 of 4 1.10None
Heart9 ± 22 of 4 0.58None
Fat body4 ± 20 of 4 0.25Down
Ovary2 ± 00 of 4 0.10Down
Testis7 ± 04 of 4 0.50Down
Male accessory glands4 ± 10 of 4 0.30Down
Virgin spermatheca2 ± 00 of 4 0.17Down
Mated spermatheca6 ± 10 of 4 0.37Down
Adult carcass8 ± 20 of 4 0.50Down
Larval CNS119 ± 114 of 4 7.08Up
Larval Salivary gland5 ± 30 of 4 0.35Down
Larval midgut210 ± 264 of 412.43Up
Larval tubule9 ± 12 of 4 0.50Down
Larval hindgut105 ± 154 of 4 6.27Up
Larval fat body7 ± 30 of 4 0.40None
Larval trachea4 ± 42 of 4 0.24Down
Larval carcass7 ± 31 of 4 0.47None
S2 cells (growing)3 ± 00 of 4 0.21Down
Whole fly16 ± 14 of 4

Looking for FBgn0031945. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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