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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031946 through 18771 annotations produced 1 hits



(CG7164):

Annotation Number : CG7164
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031946
Gbrowse : chr2L:7781502-7782627 (+) // 100.0 //
Probeset : 1623535_at
Accessions : protein= NP_609147;, nucleotide= NM_135303;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0031946.
BioGrid reports that CG7164 interacts with CG9893 .
VDRC has 2 RNAi stocks for FBgn0031946 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 10 of 4 0.00Down
Head3 ± 10 of 4 0.00Down
Eye2 ± 10 of 4 0.02Down
Thoracicoabdominal ganglion1 ± 00 of 4 0.00Down
Salivary gland7 ± 30 of 4 0.07Down
Crop3 ± 20 of 4 0.00Down
Midgut1 ± 00 of 4 0.00Down
Tubule27 ± 53 of 4 0.30Down
Hindgut2 ± 10 of 4 0.00Down
Heart1 ± 00 of 4 0.01Down
Fat body7 ± 50 of 4 0.07Down
Ovary0 ± 00 of 4 0.00Down
Testis1324 ± 354 of 412.10Up
Male accessory glands4 ± 00 of 4 0.00Down
Virgin spermatheca6 ± 00 of 4 0.06Down
Mated spermatheca8 ± 20 of 4 0.08Down
Adult carcass4 ± 00 of 4 0.00Down
Larval CNS3 ± 10 of 4 0.03Down
Larval Salivary gland4 ± 10 of 4 0.04Down
Larval midgut1 ± 00 of 4 0.01Down
Larval tubule12 ± 12 of 4 0.10Down
Larval hindgut2 ± 00 of 4 0.02Down
Larval fat body106 ± 603 of 4 1.00None
Larval trachea6 ± 71 of 4 0.05Down
Larval carcass1 ± 00 of 4 0.01Down
S2 cells (growing)2 ± 00 of 4 0.02Down
Whole fly109 ± 114 of 4

Looking for FBgn0031946. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime