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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031947 through 18771 annotations produced 1 hits



(CG7154):

Annotation Number : CG7154
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031947
Gbrowse : chr2L:7782856-7786063 (+) // 100.0 //
Probeset : 1632589_at
Accessions : protein= NP_609148;, nucleotide= NM_135304;
Pathway : 0005634 // nucleus // inferred from sequence or structural similarity
Interpro : 0003677 // DNA binding // inferred from sequence or structural similarity
FlyMine data for FBgn0031947.
BDGP gene expression has embryonic in situ data for CG7154: 28 pix of staining in 21 body parts.
VDRC has 3 RNAi stocks for FBgn0031947 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain81 74 of 4 0.90None
Head37 24 of 4 0.40Down
Eye31 14 of 4 0.36Down
Thoracicoabdominal ganglion69 34 of 4 0.80Down
Salivary gland77 33 of 4 0.89None
Crop55 24 of 4 0.60Down
Midgut48 63 of 4 0.60Down
Tubule49 34 of 4 0.60Down
Hindgut53 34 of 4 0.60Down
Heart20 24 of 4 0.23Down
Fat body26 80 of 4 0.30Down
Ovary262 44 of 4 3.00Up
Testis37 44 of 4 0.40Down
Male accessory glands75 54 of 4 0.90None
Virgin spermatheca38 13 of 4 0.44Down
Mated spermatheca40 54 of 4 0.46Down
Adult carcass37 10 of 4 0.40Down
Larval CNS189 164 of 4 2.17Up
Larval Salivary gland72 54 of 4 0.83None
Larval midgut41 34 of 4 0.47Down
Larval tubule43 54 of 4 0.50Down
Larval hindgut44 34 of 4 0.51Down
Larval fat body22 20 of 4 0.30Down
Larval trachea46 74 of 4 0.54Down
Larval carcass56 44 of 4 0.64Down
S2 cells (growing)96 64 of 4 1.11None
Whole fly87 44 of 4

Looking for FBgn0031947. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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