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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0031957 through 18771 annotations produced 1 hits

CG14534 (TwdlE):

Annotation Number : CG14534
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031957
Gbrowse : chr2L:7857956-7860838 (-) // 100.0 //
Probeset : 1628835_at
Accessions : protein= NP_609157;, nucleotide= NM_135313;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0031957.
BDGP gene expression has embryonic in situ data for CG14534: 50 pix of staining in 7 body parts.
BioGrid reports that CG14534 interacts with CG15865 CG2096 CG3114 CG31811 CG5471 CG6741 CG14709 CG15031 CG15109 CG15423 CG1691 CG17592 CG17667 CG1793 CG1856 CG2216 CG2522 CG31708 CG31731 CG33193 CG5111 CG5119 CG5134 CG5618 CG5670 CG5920 CG6416 CG6576 CG6779 CG6891 CG6917 CG6945 CG7763 CG8023 CG8198 CG8368 CG8590 CG8996 CG9079 CG9163 .
TRiP has 1 RNAi stocks for FBgn0031957 available for purchase.
VDRC has 4 RNAi stocks for FBgn0031957 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 11 of 4 1.40None
Head9 13 of 4 2.40Up
Eye33 44 of 4 8.70Up
Thoracicoabdominal ganglion6 04 of 4 1.80None
Salivary gland9 20 of 4 2.46None
Crop6 12 of 4 1.70None
Midgut2 00 of 4 0.50None
Tubule4 01 of 4 1.20None
Hindgut4 12 of 4 1.30None
Heart5 02 of 4 1.35None
Fat body13 34 of 4 3.55Up
Ovary0 00 of 4 0.20None
Testis1 00 of 4 0.40None
Male accessory glands22 83 of 4 5.80None
Virgin spermatheca11 14 of 4 3.04Up
Mated spermatheca9 13 of 4 2.61Up
Adult carcass7 10 of 4 1.80None
Larval CNS6 23 of 4 1.60None
Larval Salivary gland3 00 of 4 0.90None
Larval midgut2 00 of 4 0.69None
Larval tubule7 03 of 4 2.00Up
Larval hindgut3 02 of 4 0.83None
Larval fat body11 24 of 4 3.10Up
Larval trachea6 33 of 4 1.60None
Larval carcass8 14 of 4 2.19Up
S2 cells (growing)11 04 of 4 3.02Up
Whole fly3 12 of 4

Looking for FBgn0031957. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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