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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031959 through 18771 annotations produced 1 hits



Spz3 (spz3):

Annotation Number : CG7104
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031959
Gbrowse : chr2L:7873494-7879550 (-) // 100.0 //
Probeset : 1624432_at
Accessions : protein= NP_609160;, nucleotide= NM_135316;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0031959.
BDGP gene expression has embryonic in situ data for Spz3: 8 pix of staining in 3 body parts.
BioGrid reports that CG7104 interacts with CG8927 CG9036 .
VDRC has 3 RNAi stocks for FBgn0031959 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 ± 11 of 4 0.40Down
Head33 ± 14 of 4 2.30Up
Eye31 ± 24 of 4 2.22Up
Thoracicoabdominal ganglion5 ± 10 of 4 0.40Down
Salivary gland17 ± 30 of 4 1.21None
Crop99 ± 24 of 4 6.90Up
Midgut11 ± 12 of 4 0.80None
Tubule4 ± 00 of 4 0.30Down
Hindgut96 ± 24 of 4 6.70Up
Heart5 ± 11 of 4 0.35Down
Fat body8 ± 41 of 4 0.58None
Ovary1 ± 00 of 4 0.10Down
Testis4 ± 01 of 4 0.30Down
Male accessory glands13 ± 22 of 4 0.90None
Virgin spermatheca5 ± 11 of 4 0.40Down
Mated spermatheca10 ± 21 of 4 0.74None
Adult carcass41 ± 34 of 4 2.90Up
Larval CNS10 ± 04 of 4 0.74None
Larval Salivary gland7 ± 20 of 4 0.52None
Larval midgut10 ± 22 of 4 0.72None
Larval tubule2 ± 00 of 4 0.20Down
Larval hindgut167 ± 114 of 411.68Up
Larval fat body3 ± 00 of 4 0.20Down
Larval trachea192 ± 204 of 413.45Up
Larval carcass89 ± 414 of 4 6.27None
S2 cells (growing)2 ± 10 of 4 0.17Down
Whole fly14 ± 24 of 4

Looking for FBgn0031959. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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