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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031970 through 18771 annotations produced 1 hits



(CG7227):

Annotation Number : CG7227
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031970
Gbrowse : chr2L:7994833-7998139 (-) // 100.0 //
Probeset : 1634702_at
Accessions : protein= NP_609169;, nucleotide= NM_135325;
Pathway : 0005887 // integral to plasma membrane // non-traceable author statement /// 0016020 // membrane // inferred from electr
Interpro : 0005044 // scavenger receptor activity // non-traceable author statement
FlyMine data for FBgn0031970.
BDGP gene expression has embryonic in situ data for CG7227: 21 pix of staining in 6 body parts.
Homophila reports that CG7227 is a close match (5e-35) to human gene CD36;CHDS7 (NP_001001548), a gene associated with Platelet glycoprotein IV deficiency, 608404 (3);[Macrothrombocytopenia] (1);{Coronary heart disease, susceptibility to, 7}, 610938 (3);{Malaria, cerebral, reduced risk of}, 611162 (3);{Malaria, cerebral, susceptibility to}, 611162 (3).
VDRC has 2 RNAi stocks for FBgn0031970 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain10 02 of 4 0.50Down
Head92 54 of 4 4.10Up
Eye33 54 of 4 1.47None
Thoracicoabdominal ganglion6 20 of 4 0.30Down
Salivary gland13 60 of 4 0.60None
Crop7 21 of 4 0.30Down
Midgut36 23 of 4 1.60Up
Tubule6 10 of 4 0.30Down
Hindgut6 10 of 4 0.30Down
Heart18 14 of 4 0.84None
Fat body51 64 of 4 2.30Up
Ovary5 10 of 4 0.20Down
Testis15 52 of 4 0.70None
Male accessory glands6 10 of 4 0.30Down
Virgin spermatheca38 74 of 4 1.70None
Mated spermatheca97 174 of 4 4.33Up
Adult carcass47 44 of 4 2.10Up
Larval CNS4 31 of 4 0.20Down
Larval Salivary gland5 21 of 4 0.23Down
Larval midgut15 21 of 4 0.70None
Larval tubule10 11 of 4 0.50Down
Larval hindgut7 00 of 4 0.33Down
Larval fat body179 374 of 4 7.90Up
Larval trachea106 714 of 4 4.71None
Larval carcass6 11 of 4 0.28Down
S2 cells (growing)10 13 of 4 0.47Down
Whole fly22 34 of 4

Looking for FBgn0031970. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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