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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031971 through 18771 annotations produced 1 hits



(CG7224):

Annotation Number : CG7224
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031971
Gbrowse : chr2L:7998933-7999743 (+) // 100.0 //
Probeset : 1626442_at
Accessions : protein= NP_001033882; /// NP_609170;, nucleotide= NM_001038793; /// NM_135326;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0031971.
BDGP gene expression has embryonic in situ data for CG7224: 29 pix of staining in 16 body parts.
BioGrid reports that CG7224 interacts with CG9949 .
VDRC has 2 RNAi stocks for FBgn0031971 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1318 194 of 4 2.60Up
Head1971 774 of 4 3.90Up
Eye1955 1974 of 4 3.91Up
Thoracicoabdominal ganglion1596 314 of 4 3.20Up
Salivary gland124 124 of 4 0.25Down
Crop269 174 of 4 0.50None
Midgut60 24 of 4 0.10Down
Tubule114 114 of 4 0.20Down
Hindgut159 104 of 4 0.30Down
Heart674 864 of 4 1.35None
Fat body741 2444 of 4 1.48None
Ovary462 164 of 4 0.90None
Testis167 54 of 4 0.30Down
Male accessory glands1363 1354 of 4 2.70Up
Virgin spermatheca826 1104 of 4 1.65None
Mated spermatheca629 1004 of 4 1.26None
Adult carcass1144 364 of 4 2.30Up
Larval CNS554 654 of 4 1.11None
Larval Salivary gland76 74 of 4 0.15Down
Larval midgut88 54 of 4 0.18Down
Larval tubule58 74 of 4 0.10Down
Larval hindgut643 1874 of 4 1.29None
Larval fat body3960 4064 of 4 7.90Up
Larval trachea1898 7264 of 4 3.79Up
Larval carcass1422 3284 of 4 2.84None
S2 cells (growing)2536 484 of 4 5.07Up
Whole fly500 874 of 4

Looking for FBgn0031971. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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