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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031974 through 18771 annotations produced 1 hits



(CG12560):

Annotation Number : CG12560
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031974
Gbrowse : chr2L:8008441-8009459 (-) // 100.0 //
Probeset : 1626856_at
Accessions : protein= NP_609173;, nucleotide= NM_135329;
Interpro : 0008080 // N-acetyltransferase activity // inferred from electronic annotation /// 0008415 // acyltransferase activity /
FlyMine data for FBgn0031974.
BioGrid reports that CG12560 interacts with CG6608 .
VDRC has 3 RNAi stocks for FBgn0031974 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain31 ± 14 of 4 0.40Down
Head79 ± 34 of 4 1.00None
Eye62 ± 54 of 4 0.76Down
Thoracicoabdominal ganglion44 ± 14 of 4 0.50Down
Salivary gland89 ± 54 of 4 1.09None
Crop151 ± 94 of 4 1.90Up
Midgut140 ± 34 of 4 1.70Up
Tubule447 ± 264 of 4 5.50Up
Hindgut94 ± 64 of 4 1.20None
Heart82 ± 84 of 4 1.02None
Fat body116 ± 264 of 4 1.42None
Ovary122 ± 64 of 4 1.50Up
Testis11 ± 02 of 4 0.10Down
Male accessory glands51 ± 14 of 4 0.60Down
Virgin spermatheca107 ± 64 of 4 1.32Up
Mated spermatheca113 ± 34 of 4 1.39Up
Adult carcass64 ± 24 of 4 0.80Down
Larval CNS24 ± 44 of 4 0.30Down
Larval Salivary gland52 ± 34 of 4 0.65Down
Larval midgut95 ± 104 of 4 1.17None
Larval tubule245 ± 84 of 4 3.00Up
Larval hindgut42 ± 44 of 4 0.51Down
Larval fat body49 ± 44 of 4 0.60Down
Larval trachea50 ± 74 of 4 0.62Down
Larval carcass24 ± 24 of 4 0.31Down
S2 cells (growing)13 ± 14 of 4 0.16Down
Whole fly81 ± 34 of 4

Looking for FBgn0031974. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime