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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031976 through 18771 annotations produced 1 hits



(CG7367):

Annotation Number : CG7367
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031976
Gbrowse : chr2L:8027008-8028379 (-) // 100.0 //
Probeset : 1639515_at
Accessions : protein= NP_001162906; /// NP_609175;, nucleotide= NM_001169435; /// NM_135331;
Pathway : engulfment // inferred from mutant phenotype"
FlyMine data for FBgn0031976.
Homophila reports that CG7367 is a close match (8e-20) to human gene LIPH (NP_640341), a gene associated with Hypotrichosis, total, Mari type, 604379 (3).
VDRC has 1 RNAi stocks for FBgn0031976 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 ± 00 of 4 1.20None
Head12 ± 03 of 4 2.60Up
Eye9 ± 01 of 4 1.87Up
Thoracicoabdominal ganglion5 ± 20 of 4 1.20None
Salivary gland22 ± 51 of 4 4.72Up
Crop5 ± 10 of 4 1.20None
Midgut2 ± 00 of 4 0.40None
Tubule5 ± 10 of 4 1.10None
Hindgut4 ± 00 of 4 1.00None
Heart5 ± 12 of 4 1.14None
Fat body17 ± 72 of 4 3.65Up
Ovary3 ± 00 of 4 0.70None
Testis3 ± 10 of 4 0.80None
Male accessory glands4 ± 20 of 4 0.90None
Virgin spermatheca15 ± 11 of 4 3.13Up
Mated spermatheca13 ± 31 of 4 2.87None
Adult carcass14 ± 41 of 4 3.00None
Larval CNS5 ± 40 of 4 1.23None
Larval Salivary gland8 ± 20 of 4 1.76None
Larval midgut2 ± 00 of 4 0.44Down
Larval tubule4 ± 00 of 4 1.00None
Larval hindgut6 ± 10 of 4 1.30None
Larval fat body9 ± 40 of 4 2.00None
Larval trachea7 ± 31 of 4 1.56None
Larval carcass14 ± 11 of 4 3.04Up
S2 cells (growing)3 ± 10 of 4 0.77None
Whole fly4 ± 00 of 4

Looking for FBgn0031976. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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