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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031977 through 18771 annotations produced 1 hits



CG7380 (baf):

Annotation Number : CG7380
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031977
Gbrowse : chr2L:8029463-8030182 (+) // 99.38 //
Probeset : 1628610_at
Accessions : protein= NP_609176;, nucleotide= NM_135332;
Pathway : 0005634 // nucleus // non-traceable author statement /// 0005634 // nucleus // inferred from electronic annotation /// 0
Interpro : 0003677 // DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // non-traceable author stateme
FlyMine data for FBgn0031977.
BioGrid reports that CG7380 interacts with CG9424 CG7761 CG9025 .
TRiP has 1 RNAi stocks for FBgn0031977 available for purchase.
VDRC has 1 RNAi stocks for FBgn0031977 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain391 104 of 4 0.70Down
Head363 94 of 4 0.70Down
Eye243 34 of 4 0.45Down
Thoracicoabdominal ganglion536 304 of 4 1.00None
Salivary gland382 114 of 4 0.71Down
Crop758 274 of 4 1.40Up
Midgut309 74 of 4 0.60Down
Tubule1063 454 of 4 2.00Up
Hindgut671 234 of 4 1.20Up
Heart509 164 of 4 0.94None
Fat body245 334 of 4 0.45Down
Ovary958 274 of 4 1.80Up
Testis275 24 of 4 0.50Down
Male accessory glands256 174 of 4 0.50Down
Virgin spermatheca395 194 of 4 0.73Down
Mated spermatheca493 274 of 4 0.91None
Adult carcass289 144 of 4 0.50Down
Larval CNS905 244 of 4 1.67Up
Larval Salivary gland328 264 of 4 0.61Down
Larval midgut254 164 of 4 0.47Down
Larval tubule577 204 of 4 1.10None
Larval hindgut541 164 of 4 1.00None
Larval fat body294 184 of 4 0.50Down
Larval trachea1127 984 of 4 2.08Up
Larval carcass498 84 of 4 0.92None
S2 cells (growing)1278 194 of 4 2.36Up
Whole fly542 354 of 4

Looking for FBgn0031977. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime