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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031980 through 18771 annotations produced 3 hits



/// Ribosomal protein L36A (CG14239 /// RpL36A):

Annotation Number : Stencil:3R:22221155:22218090:GENSCAN
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039424
Gbrowse : chr3R:22228725-22230591 (-) // 98.91 //
Probeset : 1641656_at
Accessions : protein= NP_001097937;, nucleotide= NM_001104467;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005840 // ribosome // inferred from electronic anno
Interpro : 0003735 // structural constituent of ribosome // inferred from electronic annotation /// 0005216 // ion channel activity
FlyMine data for FBgn0039424.
TRiP has 1 RNAi stocks for FBgn0039424 available for purchase.
VDRC has 3 RNAi stocks for FBgn0039424 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 ± 13 of 4 0.80None
Head10 ± 14 of 4 1.40None
Eye5 ± 00 of 4 0.69Down
Thoracicoabdominal ganglion6 ± 11 of 4 0.80None
Salivary gland14 ± 60 of 4 1.92None
Crop8 ± 12 of 4 1.10None
Midgut9 ± 31 of 4 1.20None
Tubule7 ± 01 of 4 0.90None
Hindgut12 ± 14 of 4 1.60None
Heart4 ± 00 of 4 0.60Down
Fat body18 ± 44 of 4 2.46Up
Ovary5 ± 01 of 4 0.70None
Testis6 ± 02 of 4 0.90None
Male accessory glands6 ± 21 of 4 0.80None
Virgin spermatheca12 ± 12 of 4 1.68None
Mated spermatheca13 ± 22 of 4 1.79None
Adult carcass9 ± 10 of 4 1.20None
Larval CNS7 ± 13 of 4 0.92None
Larval Salivary gland6 ± 10 of 4 0.86None
Larval midgut11 ± 11 of 4 1.44Up
Larval tubule7 ± 21 of 4 1.00None
Larval hindgut14 ± 04 of 4 1.82Up
Larval fat body9 ± 20 of 4 1.30None
Larval trachea2 ± 20 of 4 0.33Down
Larval carcass7 ± 12 of 4 1.03None
S2 cells (growing)5 ± 00 of 4 0.75Down
Whole fly7 ± 01 of 4



/// Ribosomal protein L36A (CG14645 /// RpL36A):

Annotation Number : CG14645
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040687
Gbrowse : chr3R:160838-161237 (+) // 100.0 //
Probeset : 1638654_at
Accessions : protein= NP_652325;, nucleotide= NM_144068;
Pathway : 0005576 // extracellular region // inferred from electronic annotation /// 0005622 // intracellular // inferred from ele
Interpro : 0003735 // structural constituent of ribosome // inferred from electronic annotation /// 0005515 // protein binding // i
FlyMine data for FBgn0040687.
BioGrid reports that CG14645 interacts with CG30403 CG7641 CG7808 .
VDRC has 3 RNAi stocks for FBgn0040687 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 ± 41 of 4 0.00Down
Head2028 ± 6144 of 4 0.50None
Eye7 ± 31 of 4 0.00Down
Thoracicoabdominal ganglion27 ± 63 of 4 0.00Down
Salivary gland20 ± 110 of 4 0.01Down
Crop880 ± 7383 of 4 0.20Down
Midgut6565 ± 1634 of 4 1.70Up
Tubule6 ± 10 of 4 0.00Down
Hindgut25 ± 51 of 4 0.00Down
Heart16 ± 41 of 4 0.00Down
Fat body5 ± 10 of 4 0.00Down
Ovary6 ± 10 of 4 0.00Down
Testis3 ± 10 of 4 0.00Down
Male accessory glands3 ± 10 of 4 0.00Down
Virgin spermatheca3 ± 10 of 4 0.00Down
Mated spermatheca2 ± 10 of 4 0.00Down
Adult carcass287 ± 1962 of 4 0.10Down
Larval CNS4 ± 20 of 4 0.00Down
Larval Salivary gland1 ± 00 of 4 0.00Down
Larval midgut29 ± 131 of 4 0.01Down
Larval tubule3 ± 20 of 4 0.00Down
Larval hindgut9 ± 20 of 4 0.00Down
Larval fat body3 ± 10 of 4 0.00Down
Larval trachea9 ± 51 of 4 0.00Down
Larval carcass3 ± 10 of 4 0.00Down
S2 cells (growing)7 ± 10 of 4 0.00Down
Whole fly3862 ± 1844 of 4



Ribosomal protein L36A (RpL36A):

Annotation Number : CG7424
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031980
Gbrowse : chr2L:8041864-8042856 (-) // 100.0 //
Probeset : 1632962_at
Accessions : protein= NP_609179;, nucleotide= NM_135335;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005840 // ribosome // inferred from electronic anno
Interpro : 0003735 // structural constituent of ribosome // inferred from sequence or structural similarity /// 0003735 // structur
FlyMine data for FBgn0031980.
VDRC has 3 RNAi stocks for FBgn0031980 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2651 ± 574 of 4 0.70Down
Head4472 ± 1424 of 4 1.20None
Eye5938 ± 984 of 4 1.53Up
Thoracicoabdominal ganglion3626 ± 794 of 4 0.90None
Salivary gland8826 ± 2584 of 4 2.28Up
Crop5342 ± 3004 of 4 1.40Up
Midgut4494 ± 634 of 4 1.20None
Tubule3297 ± 654 of 4 0.90Down
Hindgut4463 ± 1334 of 4 1.20None
Heart6012 ± 4404 of 4 1.55Up
Fat body4944 ± 6554 of 4 1.28Up
Ovary2991 ± 444 of 4 0.80Down
Testis950 ± 164 of 4 0.20Down
Male accessory glands8077 ± 2884 of 4 2.10Up
Virgin spermatheca5141 ± 2194 of 4 1.33Up
Mated spermatheca5152 ± 1544 of 4 1.33Up
Adult carcass5490 ± 3104 of 4 1.40Up
Larval CNS2389 ± 1874 of 4 0.62Down
Larval Salivary gland6995 ± 3324 of 4 1.81Up
Larval midgut4112 ± 1044 of 4 1.06None
Larval tubule4590 ± 1074 of 4 1.20None
Larval hindgut3789 ± 844 of 4 0.98None
Larval fat body7572 ± 8624 of 4 2.00Up
Larval trachea5370 ± 2044 of 4 1.39Up
Larval carcass4128 ± 3184 of 4 1.07None
S2 cells (growing)3768 ± 764 of 4 0.97None
Whole fly3873 ± 2544 of 4

Looking for FBgn0031980. 3 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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