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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031981 through 18771 annotations produced 1 hits



(CG7466):

Annotation Number : CG7466
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031981
Gbrowse : chr2L:8043714-8054328 (+) // 100.0 //
Probeset : 1625740_at
Accessions : protein= NP_609180;, nucleotide= NM_135336;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
Interpro : 0005509 // calcium ion binding // inferred from electronic annotation
FlyMine data for FBgn0031981.
Homophila reports that CG7466 is a close match (8e-11) to human gene FBN2;CCA (NP_001990), a gene associated with Contractural arachnodactyly, congenital (3).
VDRC has 3 RNAi stocks for FBgn0031981 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain169 ± 44 of 4 3.10Up
Head104 ± 44 of 4 1.90Up
Eye107 ± 64 of 4 1.94Up
Thoracicoabdominal ganglion137 ± 54 of 4 2.50Up
Salivary gland62 ± 33 of 4 1.13None
Crop184 ± 104 of 4 3.30Up
Midgut35 ± 24 of 4 0.60Down
Tubule49 ± 24 of 4 0.90Down
Hindgut105 ± 34 of 4 1.90Up
Heart109 ± 44 of 4 1.98Up
Fat body104 ± 94 of 4 1.88Up
Ovary95 ± 54 of 4 1.70Up
Testis22 ± 32 of 4 0.40Down
Male accessory glands39 ± 53 of 4 0.70None
Virgin spermatheca83 ± 74 of 4 1.51Up
Mated spermatheca88 ± 54 of 4 1.59Up
Adult carcass92 ± 73 of 4 1.70Up
Larval CNS189 ± 94 of 4 3.43Up
Larval Salivary gland62 ± 14 of 4 1.13None
Larval midgut34 ± 13 of 4 0.62Down
Larval tubule57 ± 34 of 4 1.00None
Larval hindgut95 ± 24 of 4 1.73Up
Larval fat body102 ± 74 of 4 1.80Up
Larval trachea253 ± 74 of 4 4.58Up
Larval carcass195 ± 64 of 4 3.53Up
S2 cells (growing)89 ± 24 of 4 1.62Up
Whole fly55 ± 54 of 4

Looking for FBgn0031981. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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