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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031985 through 18771 annotations produced 1 hits



(CG8683):

Annotation Number : CG31756
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031985
Gbrowse : chr2L:8116962-8124001 (-) // 100.0 //
Probeset : 1630764_at
Accessions : protein= NP_001033884;, nucleotide= NM_001038795;
Interpro : 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical inter
FlyMine data for FBgn0031985.
BioGrid reports that CG31756 interacts with CG6459 CG7765 .
VDRC has 3 RNAi stocks for FBgn0031985 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain324 54 of 4 2.40Up
Head186 144 of 4 1.40Up
Eye182 184 of 4 1.37None
Thoracicoabdominal ganglion321 74 of 4 2.40Up
Salivary gland487 184 of 4 3.66Up
Crop187 44 of 4 1.40Up
Midgut200 54 of 4 1.50Up
Tubule238 74 of 4 1.80Up
Hindgut198 44 of 4 1.50Up
Heart148 84 of 4 1.11None
Fat body109 164 of 4 0.82None
Ovary147 64 of 4 1.10None
Testis124 54 of 4 0.90None
Male accessory glands486 94 of 4 3.70Up
Virgin spermatheca214 134 of 4 1.61Up
Mated spermatheca260 214 of 4 1.95Up
Adult carcass96 64 of 4 0.70Down
Larval CNS254 154 of 4 1.92Up
Larval Salivary gland632 384 of 4 4.75Up
Larval midgut210 54 of 4 1.58Up
Larval tubule239 24 of 4 1.80Up
Larval hindgut230 34 of 4 1.73Up
Larval fat body97 114 of 4 0.70None
Larval trachea179 84 of 4 1.35Up
Larval carcass149 84 of 4 1.12None
S2 cells (growing)301 104 of 4 2.27Up
Whole fly133 114 of 4

Looking for FBgn0031985. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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