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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031986 through 18771 annotations produced 1 hits



March 2006 (FlyBase/BDGP 5.3) (chr2L:8124391-8125721 (+) // 100.0 //):

Annotation Number : CG8673
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID :
Gbrowse :
Probeset : 1640368_at
Accessions : protein= , nucleotide=
Interpro : 0006486 // protein glycosylation // inferred from electronic annotation
Homophila reports that CG8673 is a close match (5e-30) to human gene B3GALT3;GLCT3;P (NP_149359), a gene associated with [Blood group, P system], 111400 (3);{Urinary tract infection, susceptibility to} (1).


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain35 24 of 4 2.00Up
Head11 01 of 4 0.70Down
Eye2 10 of 4 0.17Down
Thoracicoabdominal ganglion32 14 of 4 1.90Up
Salivary gland13 40 of 4 0.76None
Crop4 20 of 4 0.30Down
Midgut6 10 of 4 0.40Down
Tubule3 00 of 4 0.20Down
Hindgut4 10 of 4 0.30Down
Heart0 00 of 4 0.04Down
Fat body9 21 of 4 0.52Down
Ovary2 00 of 4 0.20Down
Testis208 124 of 412.00Up
Male accessory glands6 20 of 4 0.40Down
Virgin spermatheca6 10 of 4 0.34Down
Mated spermatheca9 22 of 4 0.56None
Adult carcass3 10 of 4 0.20Down
Larval CNS11 14 of 4 0.65Down
Larval Salivary gland7 10 of 4 0.41Down
Larval midgut6 10 of 4 0.34Down
Larval tubule6 10 of 4 0.40Down
Larval hindgut3 00 of 4 0.19Down
Larval fat body29 92 of 4 1.70None
Larval trachea4 31 of 4 0.29Down
Larval carcass2 00 of 4 0.12Down
S2 cells (growing)5 10 of 4 0.33Down
Whole fly17 04 of 4

Looking for FBgn0031986. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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