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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031995 through 18771 annotations produced 1 hits



chr2L:8190953-8196893 (-) // 100.0 // ( /// ):

Annotation Number : CG8475
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1625204_a_at
Accessions : protein= , nucleotide= NP_609189; /// NP_723356;
Pathway : 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0005976 // polysaccharide metabolic
Interpro : 0005886 // plasma membrane // inferred from electronic annotation /// 0005964 // phosphorylase kinase complex // inferre
FlyMine data for full length.
Homophila reports that CG8475 is a close match (5e-101) to human gene PHKA1 (NP_002628), a gene associated with Muscle glycogenosis, 300559 (3).


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain389 74 of 4 2.00Up
Head227 164 of 4 1.20None
Eye351 134 of 4 1.78Up
Thoracicoabdominal ganglion446 104 of 4 2.30Up
Salivary gland426 134 of 4 2.16Up
Crop210 54 of 4 1.10None
Midgut119 44 of 4 0.60Down
Tubule99 74 of 4 0.50Down
Hindgut345 94 of 4 1.80Up
Heart242 94 of 4 1.23Up
Fat body299 214 of 4 1.52Up
Ovary223 34 of 4 1.10Up
Testis82 24 of 4 0.40Down
Male accessory glands100 24 of 4 0.50Down
Virgin spermatheca218 94 of 4 1.11None
Mated spermatheca198 114 of 4 1.01None
Adult carcass688 264 of 4 3.50Up
Larval CNS183 214 of 4 0.93None
Larval Salivary gland118 44 of 4 0.60Down
Larval midgut44 24 of 4 0.23Down
Larval tubule56 34 of 4 0.30Down
Larval hindgut137 64 of 4 0.70Down
Larval fat body597 524 of 4 3.00Up
Larval trachea94 164 of 4 0.48Down
Larval carcass309 304 of 4 1.57Up
S2 cells (growing)131 54 of 4 0.67Down
Whole fly197 84 of 4

Looking for FBgn0031995. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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