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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031996 through 18771 annotations produced 1 hits



(CG8460):

Annotation Number : CG8460
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031996
Gbrowse : chr2L:8197195-8198822 (+) // 100.0 //
Probeset : 1636842_at
Accessions : protein= NP_609190;, nucleotide= NM_135346;
Interpro : "0003824 // catalytic activity // inferred from electronic annotation /// 0004553 // hydrolase activity
FlyMine data for FBgn0031996.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain92 ± 24 of 4 0.80Down
Head85 ± 34 of 4 0.80Down
Eye61 ± 34 of 4 0.56Down
Thoracicoabdominal ganglion118 ± 54 of 4 1.10None
Salivary gland245 ± 44 of 4 2.21Up
Crop75 ± 74 of 4 0.70Down
Midgut94 ± 34 of 4 0.80Down
Tubule92 ± 34 of 4 0.80Down
Hindgut89 ± 44 of 4 0.80Down
Heart107 ± 44 of 4 0.97None
Fat body104 ± 74 of 4 0.94None
Ovary195 ± 34 of 4 1.80Up
Testis64 ± 24 of 4 0.60Down
Male accessory glands715 ± 284 of 4 6.50Up
Virgin spermatheca222 ± 54 of 4 2.01Up
Mated spermatheca226 ± 64 of 4 2.04Up
Adult carcass73 ± 24 of 4 0.70Down
Larval CNS426 ± 194 of 4 3.85Up
Larval Salivary gland503 ± 164 of 4 4.55Up
Larval midgut98 ± 54 of 4 0.89None
Larval tubule105 ± 34 of 4 0.90None
Larval hindgut118 ± 54 of 4 1.07None
Larval fat body219 ± 144 of 4 2.00Up
Larval trachea346 ± 434 of 4 3.13Up
Larval carcass126 ± 34 of 4 1.14Up
S2 cells (growing)254 ± 24 of 4 2.30Up
Whole fly110 ± 24 of 4

Looking for FBgn0031996. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime