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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031999 through 18771 annotations produced 1 hits



(CG8419):

Annotation Number : CG8419
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031999
Gbrowse : chr2L:8206278-8209271 (+) // 100.0 //
Probeset : 1628616_at
Accessions : protein= NP_609193;, nucleotide= NM_135349;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from elect
FlyMine data for FBgn0031999.
VDRC has 2 RNAi stocks for FBgn0031999 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain12 14 of 4 1.00None
Head51 54 of 4 4.20Up
Eye138 74 of 411.25Up
Thoracicoabdominal ganglion8 10 of 4 0.70None
Salivary gland16 50 of 4 1.30None
Crop7 10 of 4 0.60None
Midgut9 10 of 4 0.80None
Tubule10 11 of 4 0.80Down
Hindgut4 10 of 4 0.40Down
Heart8 10 of 4 0.70None
Fat body9 50 of 4 0.76None
Ovary5 10 of 4 0.40Down
Testis21 04 of 4 1.70Up
Male accessory glands7 10 of 4 0.60None
Virgin spermatheca38 24 of 4 3.16Up
Mated spermatheca36 24 of 4 2.92Up
Adult carcass6 30 of 4 0.50None
Larval CNS6 11 of 4 0.53Down
Larval Salivary gland6 10 of 4 0.56Down
Larval midgut11 10 of 4 0.89None
Larval tubule11 20 of 4 0.90None
Larval hindgut7 20 of 4 0.56None
Larval fat body9 20 of 4 0.80None
Larval trachea8 50 of 4 0.72None
Larval carcass7 20 of 4 0.63None
S2 cells (growing)5 10 of 4 0.48Down
Whole fly12 10 of 4

Looking for FBgn0031999. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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