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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032000 through 18771 annotations produced 1 hits



(CG8372):

Annotation Number : CG8372
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032000
Gbrowse : chr2L:8212038-8212881 (-) // 100.0 //
Probeset : 1629018_a_at
Accessions : protein= NP_609194; /// NP_723362;, nucleotide= NM_135350; /// NM_164800;
FlyMine data for FBgn0032000.
BDGP gene expression has embryonic in situ data for CG8372: 4 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0032000 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain271 ± 34 of 4 1.20Up
Head280 ± 174 of 4 1.20Up
Eye452 ± 224 of 4 1.99Up
Thoracicoabdominal ganglion255 ± 34 of 4 1.10None
Salivary gland928 ± 214 of 4 4.09Up
Crop262 ± 64 of 4 1.20Up
Midgut318 ± 54 of 4 1.40Up
Tubule277 ± 54 of 4 1.20Up
Hindgut320 ± 84 of 4 1.40Up
Heart291 ± 114 of 4 1.28Up
Fat body289 ± 194 of 4 1.27Up
Ovary271 ± 74 of 4 1.20Up
Testis231 ± 84 of 4 1.00None
Male accessory glands391 ± 84 of 4 1.70Up
Virgin spermatheca261 ± 74 of 4 1.15Up
Mated spermatheca268 ± 64 of 4 1.18Up
Adult carcass232 ± 64 of 4 1.00None
Larval CNS338 ± 354 of 4 1.49Up
Larval Salivary gland342 ± 64 of 4 1.51Up
Larval midgut291 ± 214 of 4 1.28None
Larval tubule1076 ± 554 of 4 4.70Up
Larval hindgut320 ± 194 of 4 1.41Up
Larval fat body472 ± 464 of 4 2.10Up
Larval trachea430 ± 164 of 4 1.89Up
Larval carcass313 ± 144 of 4 1.38Up
S2 cells (growing)278 ± 54 of 4 1.23Up
Whole fly227 ± 94 of 4

Looking for FBgn0032000. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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