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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032001 through 18771 annotations produced 1 hits



(CG8360):

Annotation Number : CG8360
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032001
Gbrowse : chr2L:8213178-8214134 (+) // 100.0 //
Probeset : 1634429_at
Accessions : protein= NP_001162908; /// NP_609195;, nucleotide= NM_001169437; /// NM_135351;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004126 // cytidine deaminase activity // infer
FlyMine data for FBgn0032001.
BioGrid reports that CG8360 interacts with CG8360 .
VDRC has 3 RNAi stocks for FBgn0032001 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain273 ± 54 of 4 0.90None
Head639 ± 224 of 4 2.10Up
Eye543 ± 94 of 4 1.81Up
Thoracicoabdominal ganglion291 ± 34 of 4 1.00None
Salivary gland3290 ± 1044 of 410.98Up
Crop337 ± 74 of 4 1.10Up
Midgut335 ± 64 of 4 1.10None
Tubule144 ± 74 of 4 0.50Down
Hindgut500 ± 64 of 4 1.70Up
Heart1335 ± 734 of 4 4.46Up
Fat body1679 ± 1604 of 4 5.60Up
Ovary89 ± 04 of 4 0.30Down
Testis239 ± 44 of 4 0.80Down
Male accessory glands494 ± 64 of 4 1.60Up
Virgin spermatheca1268 ± 544 of 4 4.23Up
Mated spermatheca1097 ± 794 of 4 3.66Up
Adult carcass1119 ± 324 of 4 3.70Up
Larval CNS141 ± 64 of 4 0.47Down
Larval Salivary gland918 ± 664 of 4 3.07Up
Larval midgut293 ± 124 of 4 0.98None
Larval tubule424 ± 124 of 4 1.40Up
Larval hindgut259 ± 74 of 4 0.87Down
Larval fat body530 ± 594 of 4 1.80Up
Larval trachea340 ± 214 of 4 1.13Up
Larval carcass283 ± 134 of 4 0.95None
S2 cells (growing)217 ± 64 of 4 0.73Down
Whole fly299 ± 124 of 4

Looking for FBgn0032001. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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