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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032002 through 18771 annotations produced 1 hits



(CG8353):

Annotation Number : CG8353
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032002
Gbrowse : chr2L:8214304-8215240 (+) // 100.0 //
Probeset : 1632345_at
Accessions : protein= NP_609196;, nucleotide= NM_135352;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004126 // cytidine deaminase activity // infer
FlyMine data for FBgn0032002.
BDGP gene expression has embryonic in situ data for CG8353: 22 pix of staining in 10 body parts.
VDRC has 3 RNAi stocks for FBgn0032002 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain26 ± 24 of 4 0.10Down
Head48 ± 24 of 4 0.20Down
Eye7 ± 11 of 4 0.04Down
Thoracicoabdominal ganglion30 ± 14 of 4 0.20Down
Salivary gland157 ± 154 of 4 0.79None
Crop12 ± 14 of 4 0.10Down
Midgut1454 ± 1304 of 4 7.30Up
Tubule101 ± 54 of 4 0.50Down
Hindgut614 ± 764 of 4 3.10Up
Heart95 ± 124 of 4 0.48Down
Fat body147 ± 494 of 4 0.74None
Ovary8 ± 14 of 4 0.00Down
Testis54 ± 44 of 4 0.30Down
Male accessory glands7 ± 11 of 4 0.00Down
Virgin spermatheca563 ± 454 of 4 2.84Up
Mated spermatheca564 ± 1094 of 4 2.85Up
Adult carcass173 ± 194 of 4 0.90None
Larval CNS30 ± 44 of 4 0.15Down
Larval Salivary gland92 ± 44 of 4 0.47Down
Larval midgut1295 ± 1824 of 4 6.53Up
Larval tubule51 ± 54 of 4 0.30Down
Larval hindgut668 ± 894 of 4 3.37Up
Larval fat body51 ± 64 of 4 0.30Down
Larval trachea20 ± 74 of 4 0.10Down
Larval carcass533 ± 774 of 4 2.69Up
S2 cells (growing)103 ± 74 of 4 0.52Down
Whole fly198 ± 94 of 4

Looking for FBgn0032002. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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