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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032003 through 18771 annotations produced 1 hits



(CG8349):

Annotation Number : CG8349
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032003
Gbrowse : chr2L:8215914-8216906 (+) // 100.0 //
Probeset : 1636962_at
Accessions : protein= NP_609197;, nucleotide= NM_135353;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004126 // cytidine deaminase activity // infer
FlyMine data for FBgn0032003.
BDGP gene expression has embryonic in situ data for CG8349: 2 pix of staining in 1 body parts.
BioGrid reports that CG8349 interacts with CG8349 .
VDRC has 2 RNAi stocks for FBgn0032003 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 00 of 4 0.00Down
Head4 10 of 4 0.10Down
Eye0 00 of 4 0.01Down
Thoracicoabdominal ganglion1 00 of 4 0.00Down
Salivary gland6 30 of 4 0.08Down
Crop3 10 of 4 0.00Down
Midgut5 10 of 4 0.10Down
Tubule6 00 of 4 0.10Down
Hindgut2 00 of 4 0.00Down
Heart2 00 of 4 0.03Down
Fat body5 20 of 4 0.06Down
Ovary1 00 of 4 0.00Down
Testis937 254 of 411.00Up
Male accessory glands8 20 of 4 0.10Down
Virgin spermatheca1 00 of 4 0.01Down
Mated spermatheca2 00 of 4 0.03Down
Adult carcass9 10 of 4 0.10Down
Larval CNS2 30 of 4 0.03Down
Larval Salivary gland4 10 of 4 0.05Down
Larval midgut3 10 of 4 0.05Down
Larval tubule4 20 of 4 0.10Down
Larval hindgut5 10 of 4 0.06Down
Larval fat body76 403 of 4 0.90None
Larval trachea4 30 of 4 0.05Down
Larval carcass2 00 of 4 0.03Down
S2 cells (growing)15 13 of 4 0.18Down
Whole fly84 44 of 4

Looking for FBgn0032003. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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