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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032010 through 18771 annotations produced 2 hits



(CG8086):

Annotation Number : CG8086
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032010
Gbrowse : chr2L:8244544-8257502 (-) // 100.0 //
Probeset : 1623894_a_at
Accessions : protein= NP_477227; /// NP_723368; /// NP_995650; /// NP_995651;, nucleotide= NM_057879; /// NM_170611; /// NM_205928; /// NM_205929;
Pathway : 0005643 // nuclear pore // inferred from sequence or structural similarity
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0032010.
VDRC has 5 RNAi stocks for FBgn0032010 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain32 24 of 4 0.40Down
Head84 44 of 4 0.90None
Eye31 04 of 4 0.34Down
Thoracicoabdominal ganglion53 24 of 4 0.60Down
Salivary gland23 70 of 4 0.26Down
Crop211 84 of 4 2.30Up
Midgut10 40 of 4 0.10Down
Tubule4 10 of 4 0.10Down
Hindgut97 64 of 4 1.10None
Heart3 10 of 4 0.03Down
Fat body5 10 of 4 0.06Down
Ovary3 10 of 4 0.00Down
Testis629 254 of 4 6.90Up
Male accessory glands13 20 of 4 0.20Down
Virgin spermatheca32 24 of 4 0.36Down
Mated spermatheca44 34 of 4 0.48Down
Adult carcass130 214 of 4 1.40None
Larval CNS27 34 of 4 0.30Down
Larval Salivary gland3 00 of 4 0.04Down
Larval midgut2 00 of 4 0.03Down
Larval tubule8 20 of 4 0.10Down
Larval hindgut81 14 of 4 0.89None
Larval fat body73 332 of 4 0.80None
Larval trachea24 53 of 4 0.27Down
Larval carcass113 193 of 4 1.24None
S2 cells (growing)7 00 of 4 0.08Down
Whole fly91 84 of 4



(CG8086):

Annotation Number : CT33901
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032010
Gbrowse : chr2L:8245372-8250357 (-) // 100.0 //
Probeset : 1635348_at
Accessions : protein= NP_477227; /// NP_723368; /// NP_995650; /// NP_995651;, nucleotide= NM_057879; /// NM_170611; /// NM_205928; /// NM_205929;
Pathway : 0005643 // nuclear pore // inferred from sequence or structural similarity
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0032010.
VDRC has 5 RNAi stocks for FBgn0032010 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 20 of 4 0.50None
Head25 34 of 4 2.30Up
Eye15 32 of 4 1.46None
Thoracicoabdominal ganglion17 03 of 4 1.60Up
Salivary gland6 20 of 4 0.63None
Crop52 44 of 4 4.80Up
Midgut1 00 of 4 0.10Down
Tubule1 00 of 4 0.10Down
Hindgut17 51 of 4 1.60None
Heart1 10 of 4 0.17Down
Fat body2 30 of 4 0.25Down
Ovary0 00 of 4 0.10Down
Testis5 10 of 4 0.50None
Male accessory glands3 10 of 4 0.30Down
Virgin spermatheca8 10 of 4 0.75None
Mated spermatheca10 30 of 4 0.97None
Adult carcass50 44 of 4 4.60Up
Larval CNS11 11 of 4 1.03None
Larval Salivary gland4 10 of 4 0.42Down
Larval midgut1 00 of 4 0.13Down
Larval tubule1 00 of 4 0.10Down
Larval hindgut26 24 of 4 2.45Up
Larval fat body2 00 of 4 0.20Down
Larval trachea9 62 of 4 0.83None
Larval carcass51 24 of 4 4.72Up
S2 cells (growing)1 00 of 4 0.10Down
Whole fly10 12 of 4

Looking for FBgn0032010. 2 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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