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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032017 through 18771 annotations produced 1 hits



(CG7810):

Annotation Number : CG7810
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032017
Gbrowse : chr2L:8309936-8311144 (-) // 100.0 //
Probeset : 1634299_at
Accessions : protein= NP_609206;, nucleotide= NM_135362;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0032017.
BioGrid reports that CG7810 interacts with CG9326 .
VDRC has 2 RNAi stocks for FBgn0032017 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain89 ± 24 of 4 2.10Up
Head36 ± 24 of 4 0.90None
Eye45 ± 14 of 4 1.07None
Thoracicoabdominal ganglion72 ± 54 of 4 1.70Up
Salivary gland86 ± 24 of 4 2.02Up
Crop36 ± 24 of 4 0.90None
Midgut28 ± 24 of 4 0.70Down
Tubule66 ± 44 of 4 1.50Up
Hindgut93 ± 24 of 4 2.20Up
Heart20 ± 24 of 4 0.48Down
Fat body18 ± 22 of 4 0.43Down
Ovary69 ± 04 of 4 1.60Up
Testis59 ± 34 of 4 1.40Up
Male accessory glands32 ± 20 of 4 0.80Down
Virgin spermatheca21 ± 23 of 4 0.49Down
Mated spermatheca25 ± 13 of 4 0.60Down
Adult carcass29 ± 23 of 4 0.70Down
Larval CNS62 ± 44 of 4 1.47Up
Larval Salivary gland46 ± 34 of 4 1.09None
Larval midgut20 ± 02 of 4 0.47Down
Larval tubule75 ± 74 of 4 1.80Up
Larval hindgut59 ± 24 of 4 1.40Up
Larval fat body33 ± 44 of 4 0.80None
Larval trachea33 ± 24 of 4 0.78Down
Larval carcass25 ± 21 of 4 0.59Down
S2 cells (growing)22 ± 04 of 4 0.53Down
Whole fly42 ± 24 of 4

Looking for FBgn0032017. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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