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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032018 through 18771 annotations produced 1 hits



(CG7806):

Annotation Number : CG7806
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032018
Gbrowse : chr2L:8311418-8317017 (+) // 100.0 //
Probeset : 1635810_at
Accessions : protein= NP_609207;, nucleotide= NM_135363;
Pathway : 0016021 // integral to membrane // inferred from electronic annotation
Interpro : "0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from ph
FlyMine data for FBgn0032018.
Homophila reports that CG7806 is a close match (2e-11) to human gene ABCD3;PMP70;PXMP1 (NP_002849), a gene associated with Zellweger syndrome-2 (3).
BioGrid reports that CG7806 interacts with CG9871 .
TRiP has 1 RNAi stocks for FBgn0032018 available for purchase.
VDRC has 1 RNAi stocks for FBgn0032018 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain160 ± 64 of 4 1.30Up
Head115 ± 24 of 4 1.00None
Eye96 ± 74 of 4 0.81None
Thoracicoabdominal ganglion183 ± 34 of 4 1.50Up
Salivary gland413 ± 94 of 4 3.47Up
Crop165 ± 64 of 4 1.40Up
Midgut253 ± 54 of 4 2.10Up
Tubule243 ± 124 of 4 2.00Up
Hindgut306 ± 84 of 4 2.60Up
Heart177 ± 104 of 4 1.49Up
Fat body159 ± 114 of 4 1.34Up
Ovary205 ± 64 of 4 1.70Up
Testis112 ± 54 of 4 0.90None
Male accessory glands180 ± 64 of 4 1.50Up
Virgin spermatheca148 ± 54 of 4 1.25Up
Mated spermatheca176 ± 44 of 4 1.48Up
Adult carcass110 ± 84 of 4 0.90None
Larval CNS136 ± 24 of 4 1.15None
Larval Salivary gland379 ± 194 of 4 3.19Up
Larval midgut466 ± 74 of 4 3.91Up
Larval tubule526 ± 174 of 4 4.40Up
Larval hindgut306 ± 274 of 4 2.57Up
Larval fat body212 ± 154 of 4 1.80Up
Larval trachea122 ± 124 of 4 1.03None
Larval carcass193 ± 234 of 4 1.62Up
S2 cells (growing)625 ± 114 of 4 5.25Up
Whole fly119 ± 54 of 4

Looking for FBgn0032018. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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