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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032020 through 18771 annotations produced 1 hits



(CG7787):

Annotation Number : CG7787
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032020
Gbrowse : chr2L:8320323-8321285 (+) // 100.0 //
Probeset : 1633254_at
Accessions : protein= NP_609209;, nucleotide= NM_135365;
Interpro : 0005085 // guanyl-nucleotide exchange factor activity // inferred from sequence or structural similarity /// 0005085 //
FlyMine data for FBgn0032020.
BioGrid reports that CG7787 interacts with CG7954 CG9296 .
TRiP has 1 RNAi stocks for FBgn0032020 available for purchase.
VDRC has 2 RNAi stocks for FBgn0032020 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain105 14 of 4 0.70Down
Head95 44 of 4 0.60Down
Eye143 34 of 4 0.97None
Thoracicoabdominal ganglion95 24 of 4 0.60Down
Salivary gland131 74 of 4 0.89None
Crop152 54 of 4 1.00None
Midgut132 34 of 4 0.90None
Tubule160 74 of 4 1.10None
Hindgut107 24 of 4 0.70Down
Heart86 54 of 4 0.58Down
Fat body66 104 of 4 0.45Down
Ovary266 114 of 4 1.80Up
Testis91 44 of 4 0.60Down
Male accessory glands189 74 of 4 1.30Up
Virgin spermatheca105 54 of 4 0.72Down
Mated spermatheca145 74 of 4 0.98None
Adult carcass69 24 of 4 0.50Down
Larval CNS105 144 of 4 0.71Down
Larval Salivary gland178 74 of 4 1.21None
Larval midgut94 24 of 4 0.64Down
Larval tubule178 14 of 4 1.20None
Larval hindgut76 44 of 4 0.52Down
Larval fat body167 104 of 4 1.10None
Larval trachea123 334 of 4 0.84None
Larval carcass68 64 of 4 0.47Down
S2 cells (growing)273 34 of 4 1.85Up
Whole fly147 104 of 4

Looking for FBgn0032020. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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