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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0032023 through 18771 annotations produced 1 hits


Annotation Number : CG14274
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032023
Gbrowse : chr2L:8340201-8341165 (+) // 100.0 //
Probeset : 1623763_at
Accessions : protein= NP_609212;, nucleotide= NM_135368;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0032023.
BioGrid reports that CG14274 interacts with CG4073 CG5327 .
TRiP has 1 RNAi stocks for FBgn0032023 available for purchase.
VDRC has 3 RNAi stocks for FBgn0032023 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain317 204 of 433.50Up
Head70 94 of 4 7.40Up
Eye15 14 of 4 1.62Up
Thoracicoabdominal ganglion191 94 of 420.20Up
Salivary gland2 00 of 4 0.25Down
Crop0 00 of 4 0.10Down
Midgut3 20 of 4 0.40None
Tubule1 00 of 4 0.10Down
Hindgut1 00 of 4 0.10Down
Heart2 10 of 4 0.26Down
Fat body4 30 of 4 0.51None
Ovary1 00 of 4 0.10Down
Testis2 00 of 4 0.20Down
Male accessory glands3 20 of 4 0.40None
Virgin spermatheca0 00 of 4 0.09Down
Mated spermatheca1 00 of 4 0.14Down
Adult carcass4 30 of 4 0.50None
Larval CNS29 114 of 4 3.07Up
Larval Salivary gland0 00 of 4 0.07Down
Larval midgut8 10 of 4 0.85None
Larval tubule0 00 of 4 0.10Down
Larval hindgut2 00 of 4 0.22Down
Larval fat body2 10 of 4 0.20Down
Larval trachea1 00 of 4 0.11Down
Larval carcass0 00 of 4 0.09Down
S2 cells (growing)5 00 of 4 0.58Down
Whole fly9 11 of 4

Looking for FBgn0032023. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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