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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032025 through 18771 annotations produced 1 hits



(CG7778):

Annotation Number : CG7778
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032025
Gbrowse : chr2L:8346620-8350197 (+) // 100.0 //
Probeset : 1637795_at
Accessions : protein= NP_609214;, nucleotide= NM_135370;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0032025.
BDGP gene expression has embryonic in situ data for CG7778: 13 pix of staining in 5 body parts.
BioGrid reports that CG7778 interacts with CG8191 .
VDRC has 2 RNAi stocks for FBgn0032025 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 10 of 4 0.00Down
Head684 644 of 4 2.40Up
Eye135 74 of 4 0.48Down
Thoracicoabdominal ganglion7 20 of 4 0.00Down
Salivary gland9 40 of 4 0.03Down
Crop1995 274 of 4 7.10Up
Midgut70 34 of 4 0.20Down
Tubule26 82 of 4 0.10Down
Hindgut4044 1474 of 414.30Up
Heart42 54 of 4 0.15Down
Fat body35 84 of 4 0.13Down
Ovary18 13 of 4 0.10Down
Testis190 54 of 4 0.70Down
Male accessory glands30 52 of 4 0.10Down
Virgin spermatheca53 104 of 4 0.19Down
Mated spermatheca62 164 of 4 0.22Down
Adult carcass751 104 of 4 2.70Up
Larval CNS5 20 of 4 0.02Down
Larval Salivary gland0 00 of 4 0.00Down
Larval midgut160 344 of 4 0.57Down
Larval tubule34 24 of 4 0.10Down
Larval hindgut2671 784 of 4 9.44Up
Larval fat body5 21 of 4 0.00Down
Larval trachea935 264 of 4 3.31Up
Larval carcass1320 3344 of 4 4.67None
S2 cells (growing)420 124 of 4 1.48Up
Whole fly283 204 of 4

Looking for FBgn0032025. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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