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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032029 through 18771 annotations produced 1 hits



(CG17292):

Annotation Number : CG17292
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032029
Gbrowse : chr2L:8370512-8374250 (+) // 99.51 //
Probeset : 1628290_s_at
Accessions : protein= NP_609216; /// NP_723380;, nucleotide= NM_135372; /// NM_164811;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004806 // triglyceride lipase activity // infe
FlyMine data for FBgn0032029.
BDGP gene expression has embryonic in situ data for CG17292: 12 pix of staining in 7 body parts.
Homophila reports that CG17292 is a close match (1e-16) to human gene HDLCQ11;LIPD;LPL (NP_000228), a gene associated with Combined hyperlipidemia, familial, 144250 (3);Lipoprotein lipase deficiency, 238600 (3);[High density lipoprotein cholesterol level QTL 11] (3).
BioGrid reports that CG17292 interacts with CG31792 CG8449 CG8622 CG1856 CG18616 .
VDRC has 1 RNAi stocks for FBgn0032029 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain61 ± 54 of 4 0.20Down
Head227 ± 74 of 4 0.60Down
Eye235 ± 64 of 4 0.65Down
Thoracicoabdominal ganglion106 ± 34 of 4 0.30Down
Salivary gland149 ± 64 of 4 0.41Down
Crop408 ± 94 of 4 1.10Up
Midgut490 ± 154 of 4 1.40Up
Tubule326 ± 324 of 4 0.90None
Hindgut362 ± 114 of 4 1.00None
Heart1739 ± 1104 of 4 4.81Up
Fat body1825 ± 834 of 4 5.04Up
Ovary461 ± 144 of 4 1.30Up
Testis53 ± 34 of 4 0.10Down
Male accessory glands66 ± 54 of 4 0.20Down
Virgin spermatheca1088 ± 294 of 4 3.01Up
Mated spermatheca807 ± 464 of 4 2.23Up
Adult carcass1438 ± 624 of 4 4.00Up
Larval CNS82 ± 64 of 4 0.23Down
Larval Salivary gland52 ± 44 of 4 0.15Down
Larval midgut312 ± 164 of 4 0.86Down
Larval tubule41 ± 24 of 4 0.10Down
Larval hindgut254 ± 54 of 4 0.70Down
Larval fat body1128 ± 1584 of 4 3.10Up
Larval trachea833 ± 834 of 4 2.30Up
Larval carcass397 ± 304 of 4 1.10None
S2 cells (growing)134 ± 54 of 4 0.37Down
Whole fly361 ± 94 of 4

Looking for FBgn0032029. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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