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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032034 through 18771 annotations produced 1 hits



Reduction in Cnn Dots 4 (Rcd4):

Annotation Number : CG17295
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032034
Gbrowse : chr2L:8382814-8383657 (+) // 100.0 //
Probeset : 1637667_at
Accessions : protein= NP_609221;, nucleotide= NM_135377;
FlyMine data for FBgn0032034.
BioGrid reports that CG17295 interacts with CG1871 CG3114 CG6497 .
VDRC has 2 RNAi stocks for FBgn0032034 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain92 ± 44 of 4 0.70Down
Head89 ± 44 of 4 0.60Down
Eye92 ± 24 of 4 0.65Down
Thoracicoabdominal ganglion75 ± 64 of 4 0.50Down
Salivary gland84 ± 74 of 4 0.60Down
Crop98 ± 64 of 4 0.70Down
Midgut77 ± 04 of 4 0.50Down
Tubule41 ± 13 of 4 0.30Down
Hindgut89 ± 64 of 4 0.60Down
Heart100 ± 24 of 4 0.70Down
Fat body58 ± 34 of 4 0.41Down
Ovary298 ± 104 of 4 2.10Up
Testis45 ± 34 of 4 0.30Down
Male accessory glands133 ± 54 of 4 0.90None
Virgin spermatheca55 ± 14 of 4 0.39Down
Mated spermatheca63 ± 54 of 4 0.44Down
Adult carcass69 ± 44 of 4 0.50Down
Larval CNS154 ± 94 of 4 1.09None
Larval Salivary gland144 ± 154 of 4 1.01None
Larval midgut49 ± 24 of 4 0.35Down
Larval tubule61 ± 34 of 4 0.40Down
Larval hindgut73 ± 24 of 4 0.52Down
Larval fat body66 ± 53 of 4 0.50Down
Larval trachea177 ± 294 of 4 1.24None
Larval carcass101 ± 44 of 4 0.72Down
S2 cells (growing)203 ± 64 of 4 1.43Up
Whole fly142 ± 114 of 4

Looking for FBgn0032034. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime