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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032040 through 18771 annotations produced 1 hits



(CG13386):

Annotation Number : CG13386
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032040
Gbrowse : chr2L:8399043-8399972 (+) // 100.0 //
Probeset : 1627268_at
Accessions : protein= NP_609226;, nucleotide= NM_135382;
FlyMine data for FBgn0032040.
VDRC has 2 RNAi stocks for FBgn0032040 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 11 of 4 1.10None
Head7 21 of 4 2.20None
Eye0 00 of 4 0.25None
Thoracicoabdominal ganglion1 00 of 4 0.50None
Salivary gland3 10 of 4 0.98None
Crop3 10 of 4 0.90None
Midgut3 00 of 4 1.10None
Tubule4 10 of 4 1.40None
Hindgut3 11 of 4 1.00None
Heart1 00 of 4 0.38None
Fat body5 60 of 4 1.65None
Ovary0 00 of 4 0.30None
Testis9 14 of 4 2.70None
Male accessory glands6 30 of 4 1.90None
Virgin spermatheca3 00 of 4 1.15None
Mated spermatheca2 10 of 4 0.79None
Adult carcass2 10 of 4 0.80None
Larval CNS2 10 of 4 0.65None
Larval Salivary gland4 10 of 4 1.21None
Larval midgut1 00 of 4 0.46None
Larval tubule2 00 of 4 0.60None
Larval hindgut2 10 of 4 0.74None
Larval fat body3 20 of 4 1.10None
Larval trachea2 10 of 4 0.76None
Larval carcass1 00 of 4 0.49None
S2 cells (growing)3 10 of 4 0.93None
Whole fly3 10 of 4

Looking for FBgn0032040. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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