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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032042 through 18771 annotations produced 1 hits



(CG13398):

Annotation Number : CG13398
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032042
Gbrowse : chr2L:8412410-8415245 (-) // 100.0 //
Probeset : 1631712_at
Accessions : protein= NP_609227;, nucleotide= NM_135383;
Interpro : 0005158 // insulin receptor binding // inferred from electronic annotation
FlyMine data for FBgn0032042.
BDGP gene expression has embryonic in situ data for CG13398: 4 pix of staining in 1 body parts.
VDRC has 3 RNAi stocks for FBgn0032042 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain143 74 of 4 1.70Up
Head63 54 of 4 0.70Down
Eye73 54 of 4 0.86None
Thoracicoabdominal ganglion144 44 of 4 1.70Up
Salivary gland121 84 of 4 1.43Up
Crop100 44 of 4 1.20Up
Midgut142 34 of 4 1.70Up
Tubule125 34 of 4 1.50Up
Hindgut79 14 of 4 0.90None
Heart88 84 of 4 1.03None
Fat body141 174 of 4 1.66Up
Ovary232 34 of 4 2.70Up
Testis13 04 of 4 0.20Down
Male accessory glands157 64 of 4 1.90Up
Virgin spermatheca156 124 of 4 1.83Up
Mated spermatheca143 134 of 4 1.69Up
Adult carcass66 84 of 4 0.80None
Larval CNS171 104 of 4 2.01Up
Larval Salivary gland142 44 of 4 1.67Up
Larval midgut173 74 of 4 2.03Up
Larval tubule136 24 of 4 1.60Up
Larval hindgut104 24 of 4 1.22Up
Larval fat body64 54 of 4 0.80Down
Larval trachea70 124 of 4 0.82None
Larval carcass95 44 of 4 1.12None
S2 cells (growing)134 54 of 4 1.57Up
Whole fly85 44 of 4

Looking for FBgn0032042. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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