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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0032049 through 18771 annotations produced 1 hits

CG13095 (Bace):

Annotation Number : CG13095
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032049
Gbrowse : chr2L:8495107-8496304 (-) // 100.0 //
Probeset : 1635453_at
Accessions : protein= NP_609235;, nucleotide= NM_135391;
Interpro : 0004190 // aspartic-type endopeptidase activity // inferred from sequence or structural similarity /// 0004190 // aspart
FlyMine data for FBgn0032049.
Homophila reports that CG13095 is a close match (6e-63) to human gene REN (NP_000528), a gene associated with Renal tubular dysgenesis, 267430 (3);[Hyperproreninemia] (3).
BioGrid reports that CG13095 interacts with CG1363 CG1478 CG1921 CG9665 .
VDRC has 1 RNAi stocks for FBgn0032049 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 00 of 4 0.00Down
Head9 02 of 4 0.00Down
Eye19 122 of 4 0.01Down
Thoracicoabdominal ganglion7 11 of 4 0.00Down
Salivary gland29 41 of 4 0.01Down
Crop13 12 of 4 0.00Down
Midgut5866 1424 of 4 2.10Up
Tubule7 10 of 4 0.00Down
Hindgut20 44 of 4 0.00Down
Heart3 00 of 4 0.00Down
Fat body19 24 of 4 0.01Down
Ovary5 21 of 4 0.00Down
Testis15 71 of 4 0.00Down
Male accessory glands4 31 of 4 0.00Down
Virgin spermatheca9 13 of 4 0.00Down
Mated spermatheca13 41 of 4 0.00Down
Adult carcass36 84 of 4 0.00Down
Larval CNS4 20 of 4 0.00Down
Larval Salivary gland6 20 of 4 0.00Down
Larval midgut990 1524 of 4 0.36Down
Larval tubule7 20 of 4 0.00Down
Larval hindgut9 13 of 4 0.00Down
Larval fat body13 32 of 4 0.00Down
Larval trachea4 11 of 4 0.00Down
Larval carcass8 11 of 4 0.00Down
S2 cells (growing)5 10 of 4 0.00Down
Whole fly2787 1064 of 4

Looking for FBgn0032049. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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