FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0032053 through 18771 annotations produced 1 hits

mitochondrial ribosomal protein L51 (mRpL51):

Annotation Number : CG13098
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032053
Gbrowse : chr2L:8516753-8517377 (-) // 100.0 //
Probeset : 1623182_at
Accessions : protein= NP_609239;, nucleotide= NM_135395;
Pathway : 0005739 // mitochondrion // inferred from electronic annotation /// 0005762 // mitochondrial large ribosomal subunit //
Interpro : 0003735 // structural constituent of ribosome // inferred from sequence or structural similarity /// 0005515 // protein
FlyMine data for FBgn0032053.
BioGrid reports that CG13098 interacts with CG9740 .
VDRC has 3 RNAi stocks for FBgn0032053 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	244 ± 3	4 of 4	1.30	None
Head	180 ± 6	4 of 4	1.00	None
Eye	225 ± 8	4 of 4	1.21	None
Thoracicoabdominal ganglion	349 ± 16	4 of 4	1.90	Up
Salivary gland	252 ± 14	4 of 4	1.35	Up
Crop	103 ± 5	4 of 4	0.60	Down
Midgut	168 ± 4	4 of 4	0.90	None
Tubule	178 ± 3	4 of 4	1.00	Down
Hindgut	232 ± 7	4 of 4	1.20	None
Heart	146 ± 2	4 of 4	0.78	None
Fat body	184 ± 23	4 of 4	0.99	None
Ovary	211 ± 1	4 of 4	1.10	None
Testis	313 ± 8	4 of 4	1.70	Up
Male accessory glands	273 ± 19	4 of 4	1.50	Up
Virgin spermatheca	233 ± 9	4 of 4	1.25	None
Mated spermatheca	237 ± 4	4 of 4	1.27	None
Adult carcass	131 ± 10	4 of 4	0.70	Down
Larval CNS	252 ± 23	4 of 4	1.35	Up
Larval Salivary gland	239 ± 12	4 of 4	1.28	None
Larval midgut	112 ± 8	4 of 4	0.60	Down
Larval tubule	87 ± 4	4 of 4	0.50	Down
Larval hindgut	211 ± 12	4 of 4	1.13	None
Larval fat body	78 ± 5	4 of 4	0.40	Down
Larval trachea	224 ± 17	4 of 4	1.20	None
Larval carcass	151 ± 18	4 of 4	0.81	None
S2 cells (growing)	176 ± 7	4 of 4	0.94	None
Whole fly	187 ± 18	4 of 4

Looking for FBgn0032053. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720