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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032054 through 18771 annotations produced 1 hits



(CG13090):

Annotation Number : CG13090
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032054
Gbrowse : chr2L:8517445-8519180 (+) // 100.0 //
Probeset : 1635016_at
Accessions : protein= NP_609240;, nucleotide= NM_135396;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from electronic annotatio
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from
FlyMine data for FBgn0032054.
BioGrid reports that CG13090 interacts with CG14806 CG1391 CG14643 CG17050 CG18012 CG2174 CG2865 CG3082 CG31626 CG3283 CG3780 CG3998 CG4035 CG4454 CG4617 CG4799 CG6376 CG7277 CG7937 CG9273 CG6447 CG6478 .
VDRC has 2 RNAi stocks for FBgn0032054 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain60 24 of 4 0.70Down
Head52 54 of 4 0.60Down
Eye49 14 of 4 0.57Down
Thoracicoabdominal ganglion68 24 of 4 0.80None
Salivary gland95 110 of 4 1.09None
Crop85 14 of 4 1.00None
Midgut79 44 of 4 0.90None
Tubule76 04 of 4 0.90Down
Hindgut82 14 of 4 0.90None
Heart106 64 of 4 1.21None
Fat body110 94 of 4 1.26Up
Ovary137 34 of 4 1.60Up
Testis145 44 of 4 1.70Up
Male accessory glands78 34 of 4 0.90None
Virgin spermatheca39 14 of 4 0.45Down
Mated spermatheca40 24 of 4 0.46Down
Adult carcass88 64 of 4 1.00None
Larval CNS128 164 of 4 1.47Up
Larval Salivary gland130 74 of 4 1.49Up
Larval midgut52 44 of 4 0.60Down
Larval tubule113 54 of 4 1.30Up
Larval hindgut81 14 of 4 0.93None
Larval fat body76 64 of 4 0.90None
Larval trachea145 154 of 4 1.66Up
Larval carcass57 34 of 4 0.66Down
S2 cells (growing)158 64 of 4 1.81Up
Whole fly87 74 of 4

Looking for FBgn0032054. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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