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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032057 through 18771 annotations produced 1 hits



(CG9287):

Annotation Number : CG9287
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032057
Gbrowse : chr2L:8676847-8679782 (-) // 100.0 //
Probeset : 1635772_at
Accessions : protein= NP_609244;, nucleotide= NM_135400;
Interpro : 0004091 // carboxylesterase activity // inferred from sequence or structural similarity /// 0004091 // carboxylesterase
FlyMine data for FBgn0032057.
Homophila reports that CG9287 is a close match (2e-18) to human gene BCHE;CHE1 (NP_000046), a gene associated with Apnea, postanesthetic (3).
VDRC has 2 RNAi stocks for FBgn0032057 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 1.20None
Head1 ± 00 of 4 0.40None
Eye1 ± 00 of 4 0.77None
Thoracicoabdominal ganglion2 ± 10 of 4 1.10None
Salivary gland10 ± 50 of 4 4.06None
Crop2 ± 10 of 4 1.20None
Midgut4 ± 10 of 4 1.80None
Tubule2 ± 00 of 4 0.90None
Hindgut3 ± 00 of 4 1.30None
Heart1 ± 10 of 4 0.73None
Fat body1 ± 10 of 4 0.69None
Ovary1 ± 10 of 4 0.80None
Testis1 ± 00 of 4 0.50None
Male accessory glands5 ± 10 of 4 2.40None
Virgin spermatheca2 ± 00 of 4 0.96None
Mated spermatheca1 ± 00 of 4 0.46None
Adult carcass4 ± 10 of 4 1.60None
Larval CNS0 ± 00 of 4 0.40None
Larval Salivary gland2 ± 00 of 4 1.12None
Larval midgut5 ± 20 of 4 2.26None
Larval tubule2 ± 00 of 4 0.80None
Larval hindgut1 ± 00 of 4 0.58None
Larval fat body4 ± 10 of 4 1.90None
Larval trachea2 ± 10 of 4 0.98None
Larval carcass3 ± 00 of 4 1.30None
S2 cells (growing)0 ± 00 of 4 0.38None
Whole fly2 ± 00 of 4

Looking for FBgn0032057. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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