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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032065 through 18771 annotations produced 1 hits



(CG12438):

Annotation Number : CG12438
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032065
Gbrowse : chr2L:8752399-8753125 (+) // 100.0 //
Probeset : 1627867_at
Accessions : protein= NP_609249;, nucleotide= NM_135405;
FlyMine data for FBgn0032065.
VDRC has 3 RNAi stocks for FBgn0032065 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 ± 11 of 4 0.20Down
Head5 ± 10 of 4 0.20Down
Eye5 ± 00 of 4 0.17Down
Thoracicoabdominal ganglion5 ± 10 of 4 0.20Down
Salivary gland11 ± 40 of 4 0.32Down
Crop8 ± 20 of 4 0.20Down
Midgut7 ± 10 of 4 0.20Down
Tubule5 ± 00 of 4 0.20Down
Hindgut3 ± 10 of 4 0.10Down
Heart1 ± 00 of 4 0.06Down
Fat body10 ± 10 of 4 0.30Down
Ovary2 ± 00 of 4 0.10Down
Testis492 ± 144 of 414.20Up
Male accessory glands3 ± 10 of 4 0.10Down
Virgin spermatheca5 ± 00 of 4 0.14Down
Mated spermatheca3 ± 11 of 4 0.09Down
Adult carcass3 ± 10 of 4 0.10Down
Larval CNS5 ± 40 of 4 0.16Down
Larval Salivary gland4 ± 10 of 4 0.14Down
Larval midgut5 ± 10 of 4 0.16Down
Larval tubule7 ± 21 of 4 0.20Down
Larval hindgut6 ± 00 of 4 0.19Down
Larval fat body46 ± 253 of 4 1.30None
Larval trachea8 ± 42 of 4 0.24Down
Larval carcass6 ± 20 of 4 0.19Down
S2 cells (growing)7 ± 00 of 4 0.22Down
Whole fly34 ± 34 of 4

Looking for FBgn0032065. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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