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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032068 through 18771 annotations produced 1 hits



(CG9466):

Annotation Number : CG9466
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032068
Gbrowse : chr2L:8772947-8776261 (-) // 100.0 //
Probeset : 1625374_at
Accessions : protein= NP_609252;, nucleotide= NM_135408;
Pathway : 0005764 // lysosome // inferred from sequence or structural similarity
Interpro : "0003824 // catalytic activity // inferred from electronic annotation /// 0004553 // hydrolase activity
FlyMine data for FBgn0032068.
BDGP gene expression has embryonic in situ data for CG9466: 18 pix of staining in 2 body parts.
Homophila reports that CG9466 is a close match (0) to human gene MAN2B1;MANB (NP_000519), a gene associated with Mannosidosis, alpha-, types I and II, 248500 (3).
VDRC has 4 RNAi stocks for FBgn0032068 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 00 of 4 0.00Down
Head8 20 of 4 0.00Down
Eye5 20 of 4 0.01Down
Thoracicoabdominal ganglion11 11 of 4 0.00Down
Salivary gland24 50 of 4 0.04Down
Crop12 00 of 4 0.00Down
Midgut4773 2534 of 4 7.50Up
Tubule13 10 of 4 0.00Down
Hindgut9 10 of 4 0.00Down
Heart4 21 of 4 0.01Down
Fat body12 30 of 4 0.02Down
Ovary3 10 of 4 0.00Down
Testis8 11 of 4 0.00Down
Male accessory glands14 10 of 4 0.00Down
Virgin spermatheca16 20 of 4 0.03Down
Mated spermatheca16 21 of 4 0.03Down
Adult carcass21 11 of 4 0.00Down
Larval CNS7 20 of 4 0.01Down
Larval Salivary gland6 20 of 4 0.01Down
Larval midgut4721 1054 of 4 7.45Up
Larval tubule12 10 of 4 0.00Down
Larval hindgut12 00 of 4 0.02Down
Larval fat body14 20 of 4 0.00Down
Larval trachea4 10 of 4 0.01Down
Larval carcass14 00 of 4 0.02Down
S2 cells (growing)10 10 of 4 0.02Down
Whole fly634 884 of 4

Looking for FBgn0032068. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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